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14 protocols using recombinant rat ifnγ

1

Isolation and Analysis of Rat CP Cell Exosomes

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The rat CP cell line (The European Collection of Authenticated Cell Cultures, London, UK) were used for culturing. CP cells were seeded at a density of 0.8 ​× ​104 ​cells/cm2 in a 24-well plate coated with type 1 collagen (Corning, Corning, NY, USA). Cells were cultured in DMEM/F-12 (Sigma-Aldrich, Saint Louis, MO, USA), 10% FBS (CCB, NICHIREI BIOSCIENCE, Tokyo, Japan), 10 ​mg/ml recombinant rat epidermal growth factor protein (R&D Systems), 1% Insulin/Transferrin/Selenium Solution (Thermo Fisher Scientific), and 1% penicillin streptomycin (PS) (Thermo Fisher Scientific) (Battle et al., 2000 (link)). Cells were maintained in a 5% CO2 incubator at 37 ​°C. At 3 days after seeding when each cultured cell type had reached 90–100% confluence, the conventional medium was replaced with 10% EXO-FBS-50A-1 (System Biosciences, Palo Alto, CA, USA) medium with several concentrations of recombinant rat IFN-γ (0 or 0.5 ​ng/ml; R&D Systems). At 24 ​h after incubation, the culture media were collected and the exosomes were isolated using the MagCapture Exosome Isolation Kit PS (FUJIFILM Wako Pure Chemical Corp, Osaka, Japan).
miRNA isolation, cDNA synthesis, and RT-PCR were performed as described above. The relative expression of miR-146a was calculated using 2−ΔΔCt with cel-miR-39 as an external spiked control.
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2

IFNγ Exposure in Slice Cultures

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Recombinant rat IFNγ (#585-IF; R&D Systems, Minneapolis, MN) was used at a physiological dose of 500 U/mL (0.5 µL/mL). 500 U/mL did not result in any evidence of cell injury in slice cultures as measured via Sytox, yet was a sufficient stimulus to initiate an adaptive response.41 (link) Slices were exposed to IFNγ for the indicated amounts of time, then fixed for immunostaining or harvested for protein extraction.
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3

Cellular Stress and Autophagy Modulators

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The following chemicals were dissolved in DMSO and used as indicated: A23187 (Sigma; C7522; 1 μM), Tg (Tocris Bioscience; 1138; 100 nM), tunicamycin (Sigma; T7765; 5 µg/ml), torin1 (Tocris Bioscience; 4247; 1–100 nM), Bafilomycin A1 (Sigma; B1793; 100 nM), rapamycin (Calbiochem | 553210—Merck Millipore; 100 nM). Cathepsin inhibitor III (Calbiochem | 219419—Merck Millipore; 10 μM). CQ (Sigma; C6628; 20 μM) and Cathepsin inhibitor II (Calbiochem | 219385—EMD Millipore; 10 μM) and Autophagy Inhibitor 3-MA (Calbiochem | 189490—Merck Millipore; 5 mM) were dissolved in distilled water. The following cyt were used: recombinant human IL-1β (R&D systems, Abingdon, UK) at 10 U/ml in experiments with INS-1E cells and 50 U/ml in experiments with rodent islets; recombinant rat IFN-γ (R&D systems, Abingdon, UK) at 100 U/ml (7.2 ng/ml) in experiments with INS-1E cells and 500 U/ml (36 ng/ml) in experiments with rat primary islets44 (link),45 (link). The concentrations of chemicals and cyt were selected based on our previous dose–response studies45 (link).
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4

Cytokine-Induced Nitric Oxide Quantification

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Cells were treated with recombinant human IL-1β (R&D Systems, Abingdon, U.K.) and recombinant rat IFNγ (R&D Systems, Abingdon, U.K.) for 24 hr. The concentrations of cytokines (Marroqui et al., 2014 (link)) used are indicated in the figures.
The synthetic dsRNA analog PIC (Invitrogen, San Diego, CA, USA) was used at the final concentration of 1 μg/ml and its transfection into cells was performed under the same conditions as used for siRNA (see below) but using 0.15 ml of Lipofectamine 2000 (Colli et al., 2011 (link)).
Culture supernatants were collected for nitrite determination (nitrite is a stable product of nitric oxide [NO] oxidation) at OD540 nm using the Griess method (Green et al., 1982 (link)).
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5

Neuroimmune Interactions in Neosporosis

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Neuron/Glial co-cultures were treated with 300 IU/mL of recombinant rat IFN-γ (R&D Systems, USA) or 1.0 mg/mL of LPS from Escherichia coli 0111:B4 (Sigma-Aldrich, USA) diluted in culture medium. Cells were treated only with fresh medium in control conditions. Twenty-four hours after treatment, neuron/glial co-cultures were infected with tachyzoites of N. caninum (host:parasite ratio of 1:1). Analyses were performed 72 h post-infection as determined in previous studies (Jesus et al., 2013 (link)).
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6

IFNγ-induced microglial priming and activation

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BV-2 cells were plated 60–70% confluent and treated with 200 U/mL of IFNγ (R&D Systems) for 24–72 h. Primary microglia were plated at a density of 5 × 105 cells/ml and treated with 1000 U/mL of recombinant rat IFNγ (R&D Systems). Immunoproteasome inhibition was achieved using 100 nM ONX-0914 (UBPBio) for 24 h. Jak3 inhibition was achieved using 1 μM of CP-690550 (InVivoGen) or JAk2 inhibition using AZD1480 simultaneous with IFNγ treatment. Priming experiments were performed by plating 1.0 × 104 BV-2 cells or primary microglia (5 × 105 cells/ml) in a clear 96-well plate. The following day, cells were treated in the following manner: 10 μl PBS, IFNγ, 100 nM ONX-0914 and IFNγ + 100 nM ONX-0914. 24 h later, media and treatments were removed and replaced with normal culture media in the presence or absence of 100 ng/mL LPS for an additional 24 h.
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7

Quantifying IFN-γ recovery in the presence of B8R

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Recombinant rat IFN-γ (1 ng/mL) (R&D Systems) was mixed with PBS, recombinant B8R (50 ng/mL) (R&D Systems), or 0.2-μm-filtered supernatant from HeLa cells infected with AZD4820 (1 MOI) and incubated at 37°C for 1 h. Since B8R binds IFN-γ and prevents antibodies from detection by ELISA, we next performed an ELISA to determine the percent recovery of IFN-γ, as described below. Percent recovery was calculated relative to IFN-γ alone.
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8

Murine Microglial Activation Assay

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DMEM/F12, 0.25% trypsin-EDTA, and fetal bovine serum (FBS) for cell culture were from Gibco.
Primary antibody against Iba-1 and Alexa Fluor 555-conjugated secondary antibody were from Abcam and Molecular Probe, respectively. The antibodies of CD11b, CD45, and CD68 for flow cytometry detection were purchased from BD, eBioscience, and Bio-Rad, respectively, and were diluted according to the manufacturer’s instructions. Recombinant rat IL-4 was from Amsbio. LPS was from Sigma-Aldrich. Recombinant rat IFNγ was from R&D. The stock solutions of IL-4, LPS, and IFNγ were prepared using sterile ddH2O, and ddH2O was used as control.
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9

Cytotoxicity Assay for Endocrine Disruptors

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Chemicals used herein were purchased as follows: BPA (Cat. No. 239658), TBT (Cat. No. T50202), PFOA (Cat. No. 77262), TPP (Cat. No. 241288), TCS (Cat. No. PHR1338) and DDE (Cat. No. 123897) were obtained from Sigma-Aldrich (Barcelona, Spain). All stock solutions were weekly prepared by dissolution in 100% cell-culture grade, sterile-filtered DMSO (Sigma-Aldrich, Barcelona, Spain; Cat No D2650) and stored at −20 °C between uses. ICI 182,780 (Cat. No. 1047) was obtained from Tocris Cookson Ltd. (Avonmouth, UK). T0070907 (Cat. No. HY-13202) and rosiglitazone (Cat. No. HY-117287) were obtained from MedChem Express (Monmouth Junction, NJ, USA). Due to its short half-life, T0070907 was redosed every 8–10 h. Recombinant human IL-1β and recombinant rat IFNγ were obtained from R&D Systems (Abingdon, UK); (R&D Systems); human IFNγ was obtained from PeproTech (Rocky Hill, NJ). The concentrations of cytokines used herein were selected based on previous dose-response experiments performed in human and rat β-cells [88 (link),89 (link),90 (link)].
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10

Culturing Rat INS-1E Cells for Cytokine Exposure

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Rat INS-1E cells, a gift from Prof. Wollheim (CMU, Geneva, Switzerland), were cultured in RPMI 1640 with Glutamax (Invitrogen), supplemented with 10 mmol/l HEPES, 10% (v/v) heat-inactivated fetal calf serum (FCS), 100 U/mL penicillin, 100 μg/mL streptomycin, 1 mmol/L sodium pyruvate, and 50 μmol/L β-mercaptoethanol. Absence of Mycoplasma contamination was confirmed by PCR analysis using Venor®GeM Mycoplasma PCR Detection Kit (Minerva Biolabs). After plating, cells were incubated for at least 72 hours at 37°C before going in experiment. INS-1E cells were exposed to recombinant human IL1β (10 U/mL; R&D Systems), recombinant rat IFNγ (500 U/mL; R&D Systems), actinomycin D (1μg/mL; Sigma) and cycloheximide (1 μg/mL; Sigma).
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