The largest database of trusted experimental protocols

7 protocols using radioimmunoprecipitation assay buffer

1

Western Blot Analysis of Hippocampal Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following experimental exposure, rat pups (n=5 per group) were sacrificed and western blot analysis was performed as previously described (20 (link)). In brief, hippocampus tissues were homogenized in cold radioimmunoprecipitation assay buffer (Applygen Technologies Inc., Beijing, China), and the quantity of protein in the supernatants was determined using a bicinchoninic acid protein assay kit (Applygen Technologies Inc.). Protein samples (60 mg protein/lane) were separated by 8 or 10% SDS-PAGE. Following transfer to nitrocellulose membranes, the blots were probed using the following primary antibodies: Rabbit anti-Akt (Ser473; cat. no. 9272), anti-phosphorylated (p)-Akt (Ser473; cat. no. 9271), anti-GSK-3β (Ser9; cat. no. 9315), and anti-p-GSK-3β (Ser9; cat. no. 9336) antibodies (1:1,000; Cell Signaling Technology, Inc., Danvers, MA, USA); and rabbit anti-B-cell CLL/lymphoma 2 (Bcl-2; cat. no. sc-783), anti-Bcl-2-associated X protein (Bax; cat. no. sc-526) and anti-caspase-3 (cat. no. 7148) antibodies (1:200; Santa Cruz Biotechnology, Inc., Dallas, TX, USA). Fluorescent secondary antibodies (1:10,000; cat. nos. 926–32211 and 926–32210; LI-COR, Inc., Lincoln, NE, USA) were used to detect the binding of primary antibodies. Proteins were visualized by scanning the membrane on an Odyssey Infrared Imaging System (version 3.0; LI-COR, Inc.).
+ Open protocol
+ Expand
2

Quantitative Western Blot Analysis of Myostatin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot analysis was performed as previously described (11 (link)). In brief, the diaphragms were rinsed with ice-cold PBS, harvested with radioimmunoprecipitation assay buffer (Applygen, Beijing, China) and quantified using a bicinchoninic acid protein assay (WellBiology, Changsha, China). Total protein (30 µg/lane) was separated by 12% SDS-PAGE and transferred to polyvinylidene fluoride membranes (EMD Millipore, Billerica, MA, USA). The membranes were blocked in 5% bovine serum albumin (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) for 1 h at room temperature and probed with antibody against myostatin (cat no. 19142-1-AP) and β-actin (cat no. 20536-1-AP; 1:1,000; Proteintech, Chicago, IL, USA) at 4°C overnight, followed by incubation with a secondary antibody (cat no. SA00001-2; 1:5,000; Proteintech, Chicago, IL, USA) conjugated to horseradish peroxidase at room temperature for 1 h. Immunoreactivity was detected by enhanced chemiluminescent agent (Thermo Fisher Scientific, Inc., Waltham, MA, USA) according to the manufacturer's instructions. The protein expression levels were quantitatively analyzed and normalized against the β-actin loading control.
+ Open protocol
+ Expand
3

Western Blot Analysis of BDNF Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
At the end of experiment, all rats were sacrificed with 10% chloral hydrate solution (3.5 ml/kg; i.p.). Hippocampus and prefrontal cortex tissues were collected and lysed with radioimmunoprecipitation assay buffer (Applygen Technologies, Inc., Beijing, China), schizolysised for 20 min on ice and centrifuged at 12,000 × g for 10 min at 4°C. Protein samples were heated at 95°C for 8 min, separated by 12% SDS-PAGE and transferred to nitrocellulose membranes. Membrane were blocked for 2 h in TBST (25 mM Tris, 140 mM NaCl, 27 mM KCl and 0.02% Tween 20) containing 5% bovine serum albumin and incubated with primary antibodies specific for BDNF (ab108319, 1:200)(Abcam, Cambridge, MA, USA), TrkB (BS1431, 1:500), ERK (AP0491, 1:500), pERK (BS4621, 1:500), Akt (BS1502, 1:500), PI3K (BS3678, 1:500), pGSK3β (BS4084, 1:500) and GSK3β (BS1402, 1:500; Bioworld Technology, Inc., St. Louis Park, MN, USA), pCREB (#9198, 1:1,000) and CREB (#9197, 1:1,000; Cell Signaling Technology, Inc., Danvers, MA, USA) at 4°C over night. Following three washes with TBST, membranes were incubated for 1 h at room temperature with horseradish peroxidase-labeled secondary antibodies (BS13278, 1:5,000; Bioworld Technology, Inc.), washed with TBST three times. Blots were developed using a electrochemiluminescence system (UVP LLC, Upland, CA, USA).
+ Open protocol
+ Expand
4

Cardiac Mitochondrial Protein Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse cardiac tissue was homogenized in a mixture containing radioimmunoprecipitation assay buffer (Cat: C1053, Beijing Applygen Technologies Inc., China) in the presence of a protease inhibitor cocktail (Cat: G6521, Promega, USA) and the protein content was determined using BCA protein assay kit (Cat: 23227, Pierce, USA). Then protein (20 µg of protein per lane) was subjected to electrophoresis on 10% sodium dodecyl sulfate-polyacrylamide gels and transferred onto nitrocellulose membranes (Pall Corp., USA) according to standard procedures. The membranes were blocked for 2 h with 5% nonfat milk in TBST (Tris Buffered Saline Tween). Membranes were incubated with each primary antibody (1:500–1:2000 dilution) overnight at 4 °C followed by the appropriate horseradish peroxidase (HRP)-conjugated secondary antibody (1:1000 dilution). Antibody binding was detected using the SuperSignal West Pico kit (Pierce, USA) according to the manufacturer’s instructions. Antibodies to SDHB (1:1000; Cat: GTX113833), ATP5A1 (1:1000; Cat: GTX101741), UQCRC2 (1:10,000; Cat: GTX114873) were purchased from GeneTex. NDUFB8 (1:5000; Cat: ab192878) was purchased from Abcam. Alpha Tubulin (1:5000; Cat: 66031-1-Ig) was purchased from Proteintech.
+ Open protocol
+ Expand
5

Protein Extraction and Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cells were washed with PBS and lysed in radioimmunoprecipitation assay buffer and protease inhibitor (Applygen Technologies, China) according to the manufacturer's instructions. All steps of protein extraction were performed on ice. The lysates were assayed using the bicinchoninic acid kit to determine the protein concentration. Equal amount of protein samples (20–80 μg) were separated using 10–12% gradient polyacrylamide gels (Bio-Rad) and then electrotransferred to polyvinylidene fluoride membranes. After blocking with 5% skim milk for 1 h, the membranes were incubated with the specific antibodies (LC3: ab48394, Abcam, USA; Parkin: ab77924, Abcam, USA; PINK: ab23707, Abcam, USA; GAPDH: ab181602, Abcam, USA) overnight at 4°C. Following three washes with Tris-buffered saline with Tween-20 (Applygen Technologies, China), the membranes were incubated with a secondary antibody for 1 h at room temperature. All primary antibodies were diluted at 1 : 1000, and the corresponding horseradish peroxidase-conjugated secondary antibodies were diluted at 1 : 5000. After three washes with TBST, the blot was visualized and subjected to quantification analysis using Quantity-One (Bio-Rad, the USA) software.
+ Open protocol
+ Expand
6

Quantification of Protein Expression in Macrophages and Tumor Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein from macrophages, THP-1 cells, FaDu cells, and tumor tissues were dissolved in radioimmunoprecipitation assay buffer (Applygen, Beijing, China). Equal amounts of protein lysates were loaded onto a 10% SDS-PAGE gel for electrophoresis and transferred to a PVDF membrane. After blocking with 5% nonfat milk, the membranes were incubated overnight at 4 °C with primary antibodies against FADS1 (ab126706, Abcam, UK), FADS2 (ab232898, Abcam, UK), cyclin B1 (ab32053, Abcam, UK), CDK1 (ab210008, Abcam, UK), Bcl-2 (ab32124, Abcam, UK), and BAX (ab32503, Abcam, UK). The next day, the membranes were then incubated with secondary antibodies (dilution 1:5000) for 1 h at 25 °C. After washing three times with TBST for 10 min, the blots were visualized using a chemiluminescence western blotting system and quantified using ImageJ software (version 1.8.0, National Institutes of Health, USA).
+ Open protocol
+ Expand
7

Comprehensive Protein Analysis by Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was conducted according to a protocol previously described [43 (link)]. Briefly, the tissues were lysed with radioimmunoprecipitation assay buffer (Applygen, Beijing, China) for 30 min and then homogenized using an ultrasound treatment at 100 W for 3 min and centrifuged at 12,000 × g for 20 min. Protein concentrations were quantified using the bicinchoninic acid assay. The proteins were then denatured with sodium dodecyl sulfate (SDS) protein loading buffer (Applygen) and were separated by SDS-polyacrylamide gel electrophoresis (15 μg per well). Samples were transferred to membranes and immunoblotted with the following primary antibodies: anti-GAPDH antibody (1:2000, Abcam, Cambridge, UK), anti-GAP43 antibody (1:1000, Abcam), anti-LAMP-2 antibody (1:500, Abcam), anti-SNAP25 antibody (1:1000, Abcam), anti-Alix antibody (1:1000, Cell Signaling Technology, Danvers, MA, USA), anti-TSG101 antibody (1:2000, ThermoFisher Scientific), anti-CD63 antibody (1:1000, ThermoFisher Scientific), and anti-APOB antibody (1:1000, ThermoFisher Scientific).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!