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9 protocols using anti ki 67 antibody clone mib 1

1

IHC Staining for Tumor Analysis

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Tumors were examined using IHC staining analysis in the same manner as described above. Anti-KLG antibody and anti-Ki-67 antibody (clone MIB-1, ready to use; Dako) were used for IHC analysis. Ki-67 was scored as the percentage of nuclei-stained cells among all cancer cells, regardless of the intensity (30 (link)).
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2

Immunohistochemical Analysis of Tumors

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Tumors were examined by IHC staining analysis as previously described [20 (link)]. Briefly, anti-KLγ antibody, antiKi-67 antibody (clone MIB-1, ready to use; Dako, Japan), and anti-E-cadherin antibody (3195; rabbit monoclonal, dilution 1/1000; Cell Signaling Technology, Beverly, MA, USA) were used for IHC analysis. Moreover, to identify apoptotic cells by terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) assay, apoptotic cells in the xenografts were detected using a TUNEL apoptosis detection kit (R&D Systems, Minneapolis, MN, USA) according to the manufacturer's instructions.
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3

Xenograft Tissue Analysis Protocol

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Xenografts were embedded in paraffin and subjected to hematoxylin-and-eosin staining or to immunoperoxidase staining with the mouse monoclonal anti-Ki-67 antibody (clone MIB-1, Dako). After incubation with secondary antibodies, immunoreactivities were revealed by incubation in DAB chromogen (Dako). Images were captured with the Leica LAS EZ software using a Leica DM LB microscope.
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4

Optimizing IHC Detection of hERG1 and EGF-R

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IHC for hERG1 and EGF-R detection was performed as previously reported (Lastraioli et al, 2012 (link)) using two different preparations (either unpurified or affinity purified through a protein A column) of the α-hERG1-MoAb directed against the S5-pore region (DIVAL Toscana Srl). Protocols and data were compared to determine the best experimental conditions. Proliferation index was evaluated by performing IHC with anti-Ki67 antibody (clone MIB-1, DAKO Cytomation, Glostrup, Denmark), as previously reported (Lastraioli et al, 2006 (link)). IHC protocol is detailed in Supplementary Information.
hERG1 and EGF-R expression were evaluated by an immunohistochemical score calculated by combining the estimate of the percentage of immunoreactive cells (quantity score) with the estimate of staining intensity (staining-intensity score). This method is frequently applied in similar conditions when working with cytoplasmic/membrane proteins (Perrone et al, 2005 (link)). The details of the scoring system are reported in Supplementary Information (Materials and Methods of experiments on primary samples).
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5

Immunostaining of Tumor Markers

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For immunostaining, the tumors were embedded in paraffin using standard methods. For Ki67, KRAS and PIK3CA staining, dehydrated sections were blocked with 3% BSA, and stained with anti Ki67 antibody (clone MIB-1, DakoCytomation, Glostrup, Denmark), anti KRAS antibody (clone 9.13, ThermoFisher Scientific, Schwerte, Germany), or anti PIK3CA antibody (PI3Kinase-p110α (4249, Cell Signaling Technology, Danvers, MA, USA),) processed with mouse anti rabbit-peroxidase, washed and developed according to standard methods. Counterstain was performed using hematoxylin using standard methods.
For c-MYC and KRAS immunofluorescence, dehydrated sections were boiled for 3 min in 10 mM citric acid, 0.05% Tween 20, pH 6.0, washed twice in PBS and blocked in 1.5% normal goat serum, 0.1% Tween 20 in PBS. Sections were incubated with c-MYC (clone Y69, Abcam, Cambridge, UK; 1:500) and KRAS (ab55391, Abcam, Cambridge, UK; 1:100) antibody diluted in blocking solution overnight at 4°C, washed three times in PBS/0.1% Tween 20 for 5 min, incubated with secondary antibodies (goat anti-rabbit-Cy3 and donkey anti-mouse-Alexa 488, 1:500 each) diluted in blocking solution for 1–2 h at RT, counterstained with Hoechst 33342 and mounted using Dako mounting medium.
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6

Quantitative Ki-67 Immunostaining of Papillary Thyroid Carcinoma

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Immunostaining was performed using 4-μm-thick FFPE sections of the same PTC cases. Anti-Ki-67 antibody (clone MIB1, Dako) was used as a primary antibody. The staining was carried out using the Dako Cytomation Autostainer Universal System (Dako) and the Envision kit (Dako) according to the manufacturer’s instruction. A single pathologist (MH) evaluated the specimens without clinical information of the patient. To obtain the Ki-67 LI, at least 500 carcinoma cells in hot areas were analyzed under × 400 magnification. Staining results were classified into three groups:<5%, 5%–10%, and >10% of positive cells.
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7

Immunohistochemical Assessment of Ki-67 Expression

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Tissue sections were immunostained with an anti-Ki-67 antibody (clone MIB-1; 1:100; Dako, Denmark). Tissue sections were deparaffinized in xylene, rehydrated through serial dilutions of ethanol, and washed in phosphate-buffered saline (pH 7.2), and then microwaved at 500 W for 2 × 5 min in 10 mM citrate buffer (pH 6.0). After rinsing in Tris-buffered saline (pH 7.6), the sections were immersed in a solution of H2O2 (3%) to block endogenous peroxidase activity, followed by the addition of 5% fetal calf serum (1:20 dilution). The samples were then incubated with a Ki-67 primary antibody (12202,1:400, Cell Signaling Technology [CST]) overnight at 4°C. After a wash, the primary antibody was detected by means of an appropriate secondary antibody (Universal PV9000 Kit; Zhongshan Biotechnology, Beijing, China), incubated for 30 min at 37°C, and then visualized with diaminobenzidine (DAB). Counterstaining was carried out with hematoxylin.
Briefly, the nuclear staining intensity was assessed in 1000 cells randomly selected from 5 areas (2 distinct lesions were selected in each area) by 2 of the authors and a pathologist, under a microscope at ×400 magnification, and were graded as follows: 0, negative <10%; 1+, weakly positive 10–33%; 2+, moderately positive 34–66%; and 3+, strongly positive >66%.
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8

Molecular Mechanisms of Betulinic Acid

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Anti-AR (N-20), anti-NF-kB/p65 (sc-109), anti-GAPDH (6c5), and anti-Lamin B1 (B-10) antibodies and an anti-p-NF-kB/p65 antibody (Ser 536) were purchased from Santa Cruz Biotechnology and Cell Signaling Technology, respectively. An anti-Ki-67 antibody (clone MIB-1) was from Dako. We obtained betulinic acid (BA; ref.
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9

Esophageal Histological Analysis

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The esophagus was fixed in 40 g/l of formaldehyde saline, embedded in paraffin and cut into 5 μm sections. Tissue sections were stained with Masson's trichrome to examine the accumulation of collagen fibers. Three fields on a section from each pig were photographed, and the thickness of the stained areas was measured (200) with a digital image analyser (WinROOF, Mitani Co., Fukui, Japan and NDP. view2 software, Hamamatsu, Japan).
The tissue sections were stained with anti-α-smooth muscle actin (α-SMA) antibody (clone 1A4, dilution; 1:1,000, Sigma-Aldrich) for 60 min, anti-myeloperoxidase (MPO) antibody (dilution; 1:300, Thermo Scientific, Waltham, Massachusets, USA) for 40 min, anti-CD107a antibody (clone 4E9/11, dilution; 1:300, AbD Serotec, Kidlington, UK) for 60 min, anti-CD31 antibody (clone M-20, dilution; 1:600, Santa Cruz Biotechnology, Dallas, Texas, USA) for 30 min and anti-Ki-67 antibody (clone MIB-1, dilution; 1:100, Dako, Glostrup, Denmark) for 60 min at room temperature. Nine random fields on a section from each esophagus were photographed, and stained areas were calculated from the entire cross-sectional area of the esophagus.
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