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5 protocols using dna restriction enzyme

1

Isolation and Purification of Macrolides

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All chemical reagents were purchased from FUJIFILM Wako Pure Chemical Corporation (Tokyo, Japan), unless otherwise indicated. DNA oligonucleotides were synthesized by Eurofins Genomics (Tokyo, Japan). The DNA polymerase Prime STAR GXL (Takara Bio, Shiga, Japan) and KOD FX Neo (Toyobo, Osaka, Japan) were used for high-fidelity DNA amplification and inverse polymerase chain reaction (PCR). The Diversify PCR Random Mutagenesis kit (Takara Bio, Mountain View, CA, USA) was used to perform error-prone PCR. All DNA restriction enzymes were obtained from Takara Bio (Shiga, Japan). M-I, M-II, M-IV, and M-V were isolated and purified from the fermentation broth of M. griseorubida A11725 as per the procedures described by Satoi et al. (1980 (link)).
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2

DNA Polymerase Enzymatic Assay

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In this study, the TransStartFastPfu DNA polymerase and TransStartR easyTaq DNA polymerase were purchased from TransGen Biotech Co., Ltd. (Beijing, China). DNA restriction enzymes, T4 ligase, dNTPs, RNase, and DL5000 Marker were provided by Takara Biotechnology Co., Ltd. (Dalian, China). The DNA recovery kit and plasmid extraction kit were bought from Omega Bio-Tek, Guangzhou, China. Other chemicals were bought from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China).
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3

Genetic Engineering of Actinobacteria

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All polysaccharides and XOSs were purchased from Megazyme (Ireland). Genomic DNA of S. rochei and B. velezensis were extracted using a Rapid Extraction Kit from Sangon (China). DNA amplification was used 2× Phanta Max Master Mix from Vazyme (China). PCR products were purified with DNA Purification Kit from GeneStar (China). DNA restriction enzymes (EcoRI, XhoI, and HindШ) and T4 DNA ligase were purchased from TaKaRa Bio (China). Ni+-NTA bead was purchased from CowinBio (China). All other chemicals were of analytical grade and commercially available.
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4

Recombinant Protein Expression in E. coli

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Escherichia coli strains BL21 (DE3) and DH5α from TaKaRa (Dalian, China) were cultivated in Luria–Bertani (LB) medium containing Kanamycin (50 μg/mL) when necessary. For the expression of recombinant proteins, plasmid pET-24a (+) was used. The DNA polymerase and DNA Restriction enzyme were from TaKaRa (Dalian, China). TIANamp Bacteria DNA Kit was purchased from TIANGEN BIOTECH (Beijing, China). ClonExpress II One Step Cloning Kit was purchased from Vazyme (Nanjing, China). Qingdao Gather Great Ocean Algae Industry Group Co., Ltd. (Qingdao, China) provided Alginate and polyM, polyG were from Qingdao HEHAI Biotech Co., Ltd. (Qingdao, China).
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5

Rapid Quantification of Dialkyl Phosphates

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Analytical DOP standards were purchased from Dr. Ehrenstorfer GmbH (Augsburg, Germany). The hybridoma cell line (12C2), the coating hapten H1 (4-((diethoxyphosphorothioyl) amino) butanoic acid), and the coating antigen (hapten 2-ovalbumin) were self-prepared [11 (link)], as previously described. The XL1-Blue and Top 10F’ Escherichia coli strains have previously been established by our laboratory. The plasmid vector pComb3XSS (Figure 1A) was obtained from the Barbas Laboratory, TSRI, La Jolla, CA, USA. The helper phage VCSM13 was obtained from the Naval General Hospital of Beijing, China. Horseradish peroxidase (HRP), and 3,3′,5,5′-tetramethylbenzidine (TMB) were obtained from Sigma-Aldrich (Shanghai, China). Ampicillin, kanamycin, and Isopropyl β-d-thiogalactopyranoside (IPTG) were purchased from Takara (Dalian, China). DNA polymerase and DNA restriction enzyme were also purchased from Takara. HRP-conjugated goat anti-mouse IgG and anti-His tag mouse monoclonal antibodies were purchased from TransGen Biotech Co. Ltd (Beijing, China). Mut Express II Fast Mutagenesis Kit V2 for site-specific mutagenesis was obtained from Vazyme Biotech Co., Ltd. (Nanjing, China). All other chemicals were standard commercial analytical-grade reagents.
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