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11 protocols using hat activity colorimetric assay kit

1

Colorimetric Assay of HAT Activity

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The HAT activity was measured using the colorimetric HAT activity assay kit (Abcam) according to the manufacturer’s instructions. Briefly, neuronal lysates were incubated with HAT substrates and NADH-generating enzyme in HAT assay buffer with the presence of and absence of 8mM 3OHB for 1 hr at 37°C. Absorbance was determined at 450 nm in an ELISA plate reader, with active nuclear extract used as a positive control and standard. The HAT activity was normalized to the protein content of the cell lysates.
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2

Quantifying Histone Acetyltransferase Activity

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HAT activity was measured using the commercially available colorimetric HAT activity assay kit (Abcam). Briefly, 50 µg of HeLa cell nuclear extract (Santa Cruz Biotechnology) was incubated, with or without carnosol, in HAT assay buffer according to the manufacturer’s instructions. Absorbance was measured at 450 nm. Experiments were carried out in triplicate and repeated three times. Data are represented as mean values ± SEM.
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3

HDAC and HAT Activity Assays in Lung Tissues

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The HDAC and HAT activities in the right upper lung tissues were measured using colorimetric activity assay kits (Colorimetric HDAC Activity Assay Kit [Catalog #K331-100); HAT Activity Colorimetric Assay Kit [Catalog #K332-100); BioVision Inc.,USA], in accordance with the manufacturer’s protocols. Briefly, an HDAC colorimetric substrate was incubated with 80 μg of total nuclear extracts from lung tissues for 60 min at 37°C. Following the incubation, lysine-developer solution was added to generate a measurable chromophore that was analyzed by the absorbance at 405 nm using an ELISA microplate reader (Bio-Rad Laboratories, USA). HeLa cells nuclear extracts (4 μg) were used as a positive control. An HDAC inhibitor, trichostatin A, was used to demonstrate the specificity of the deacetylation activities. For the HAT activity assay, an active nuclear extract as a positive control and acetyl-CoA as a cofactor were utilized. Total nuclear extracts (50 μg) were incubated with acetyl-CoA at 37°C for 120 min. Acetylation of the peptide substrate by active HAT released the free form of CoA, which then served as an essential coenzyme for producing NADH. The produced NADH was detected spectrophotometrically upon reacting with a soluble tetrazolium dye. The activity was analyzed by the absorbance at 440 nm using the above-described ELISA plate reader.
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4

Colorimetric Assay of HAT and HDAC

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The activity of the HAT and HDAC enzymes were determined with using ready-made kits such as the HAT Activity Colorimetric Assay Kit (Biovision, Milpitas, CA, USA) and the HDAC Activity Colorimetric Kit (Biovision, Milpitas, CA, USA). The experiments were carried out in accordance with the manufacturer’s procedures. Previously isolated extracts of nuclear proteins were used as a material for the research.
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5

Andro-Induced Nuclear HAT Activity

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The HAT Activity was detected using the HAT Activity Colorimetric Assay Kit (Biovision,USA) following the manufacturer’s instructions. The nuclear extracts were prepared from the indicated cells treated with or without Andro.
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6

Histone Acetyltransferase Activity in Stem Cells

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Hat enzymatic activity in undifferentiated SCR and KD ESCs, as well as in differentiated 4-, and 16-day SCR and KD EBs was determined at the nuclear and cytosolic fraction. Fractionation of the nuclei and cytosol has been performed according to the BioVision kit (product number: K266-25) (BioVision) of 106 cells after trypsinization of the undifferentiated and 16-day EBs. The Hat activity has been determined in a 96-well plate according to the Hat activity colorimetric assay kit from BioVision (K332-100). According to the instructions of the kit manual, the kit utilizes active nuclear extract from HeLa cells as a positive control and acetyl CoA as a co-factor. Acetylation of a supplied peptide substrate by active Hat releases the free form of CoA, which is a co-enzyme for producing NADH. NADH reacts with a soluble tetrazolium dye, and the reaction product can be detected by the absorption at 440 nm.
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7

Temporal Changes in Histone Modifying Enzymes

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Slices from corpora lutea from days 2–5, 6–10, 11–16, and 17–20 served as the material for nuclear protein isolation, using the Nuclear/Cytosol Fractionation Kit (Biovision, Milpitas, CA, USA). Isolated proteins were used to determine the activity of HAT and HDAC, using the HAT Activity Colorimetric Assay Kit (Biovision, Milpitas, CA, USA) and the HDAC Activity Colorimetric Assay Kit (Biovision, Milpitas, CA, USA), respectively, according to the manufacturer’s instructions. The materials for the study were the previously isolated nuclear protein extracts.
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8

Epigenetic Regulation Analysis Protocol

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The total DNA of cell samples was isolated using the Ezup Column Animal Genomic DNA Purification Kit (Sangon Biotech, shanghai, China) for the DNA methylation analysis. The purity and concentration of DNA were measured by a spectrophotometer (Implen, Munich, Germany). The total DNA methylation levels were analyzed using the MethylFlash Global DNA Methylation (5-mC) ELISA Easy Kit (Epigentek Group Inc., Farmingdale, NY, USA). Nuclear protein was isolated using the Nucleoprotein Extraction Kit (Sangon Biotech, Shanghai, China) for histone acetylation and HAT and HDAC activity analyses. The concentration of nuclear protein was measured using the BCA Protein Assay Kit (Sangon Biotech, Shanghai, China) and a microplate reader (Thermo Fisher Scientific, Waltham, MA, USA). The acetylation levels of histone H3 and H4 were analyzed by Western Blot. The activity of DNMT, HAT, and HDAC was detected by the EpiQuik™ DNMT Activity/Inhibition Assay Ultra Kit (Epigentek Group Inc., Farmingdale, NY, USA), HAT Activity Colorimetric Assay Kit (BioVision, Milpitas, CA, USA), and HDAC Activity Colorimetric Assay Kit (BioVision, Milpitas, CA, USA), respectively. All assays were performed according to the manufacturer’s instructions.
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9

DNA Methylation and HAT Activity Analysis

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DNA was extracted from VWAT by using the Maxwell 16 System and Maxwell 16 Blood DNA Purification kit (Promega) and analyzed for global methylation with the Methylamp Global DNA Methylation Quantification Kit (Epigentek, Farmingdale, NY). Histone acetyltransferase (HAT) activity using VWAT nuclear extracts was quantified using the HAT Activity Colorimetric Assay Kit (BioVision, Mountain View, CA).
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10

Histone Acetylation Analysis Protocol

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(-)-EC (>95% of purity) and D-glucose were purchased from Sigma (St Louis, MO, USA). Anti-TATA was obtained from Abcam (Cambridge, MA, USA). All other antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). HAT activity colorimetric assay kit and milliplex MAP Kit were obtained from Biovision (Mountain View, CA, USA). NE-PER nuclear and cytoplasmic extraction reagents and BCA kit were purchased from Pierce (Rockford, IL, USA). Histone purification kit was obtained from Active Motif (Carlsbad, CA, USA).
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