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6 protocols using 1.4 na objective

1

Quantitative Fluorescence Microscopy of Transfected Cells

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Transfected HEK293 cells were examined with an SP8 confocal fluorescence microscope using 63 × 1.4 NA objective, Leica (Wetzlar, Germany). Alternatively, cells were observed microscopically using an upright Olympus BX51WI equipped with 100 × 1 NA objective and images were captured with a Grasshopper3 CMOS camera (FLIR, Richmond, BC, Canada) controlled by manufacturer provided software. To generate images for quantitative analysis, we kept camera, microscope, and excitation light source (X-Cite 120LEDBoost, Excelitas Technologies, 2% intensity) settings constant. To observe cells with low-level fluorescence, excitation light was set at 15% of intensity. Fluorescence intensities were obtained using Fiji37 (link). Regions of interest were used to obtain average intensity values from the transfected HEK293 cells (Icell) and an area without cells (Ibackground) within the same image. Fluorescence intensity of transfected HEK293 cells (Inorm) for each cell was normalized (Inorm = Icell − Ibackground). Each data sample represent average normalized intensity of the transfected cells within an image. We captured 3 to 6 fields of view per dish, using two dishes per construct in every experiment.
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2

Immunostaining of Neuronal Cytoskeleton in Differentiated SK-N-BE(2) Cells

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SK-N-BE(2) cells were obtained from Dr. B. Förthmann (MHH, Hannover, Germany). The cells were maintained in Corning plastic ware in DMEM/F12 medium supplemented with 10% FCS, glucose (4.5 g/liter), sodium pyruvate (1 mm), and penicillin-streptomycin (100 units/ml). The cells were seeded on 12-mm glass coverslips and differentiated with 10 μm all-trans-retinoic acid for a period of 6 days. The cell were fixed with 1% PFA in incomplete DMEM, permeabilized for 5 min in 0.1% Triton X-100, and blocked for 1 h with 2% BSA in PBS. Samples were incubated with rabbit polyclonal NM-2B primary antibody (Covance, catalog no. PRB-445P) for 1 h at room temperature in blocking solution, in combination with the following sheep polyclonal Tpm specific antibodies: γ/9d (Merck Millipore, catalog no. AB5447), α/1b (Merck Millipore, catalog no. ABC499), and α/9d (Merck Millipore, catalog no. AB5441) (1 (link)). Secondary antibodies were applied for 30 min at room temperature in blocking solution: GAR-IgG-AlexaFluor488 (Jackson ImmunoResearch, catalog no. 111-545-144) and DAS-IgG-Cy3 (Merck Millipore, catalog no. AP184C). Images were acquired using a Leica TCS SP8 confocal laser microscope equipped with a 63×/1.4 NA objective (Research Core Unit for Laser Microscopy, MHH). Image analysis was performed with the Fiji release of ImageJ software version 1.49s (59 (link)).
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3

Confocal Microscopy of Transfected HEK293 Cells

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Transfected HEK293 cells were examined with an SP8 confocal fluorescence microscope using 63 × 1.4 NA objective, Leica (Wetzlar, Germany) as described previously17 (link). Briefly, cells were observed microscopically using an upright Olympus BX51WI equipped with 100 × 1 NA objective and images were captured using a Grasshopper3 CMOS camera (FLIR, Richmond, BC, Canada) controlled by Leica LAS X version 3.5 software (available at: https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/). All figures were created using Adobe Illustrator CS6 (Available at: https://adobe.com/products/illustrator), under an Adobe Inc., Creative Cloud Desktop 2019 shared device license to Case Western Reserve University (CWRU) that operates until 3/31/2022.
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4

Live-cell Confocal Imaging of Protein Dynamics

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Cells grown on 25-mm round coverslips were transferred to an imaging chamber and washed with DPBS. Drug solutions were added directly to the chamber by pipetting. Confocal images were acquired using a Leica (Wetzlar, Germany) SP8 scanning confocal microscope and a ×63, 1.4 NA objective. Venus was excited with a 488-nm diode laser and detected at 500–650 nm. Cerulean was excited with a 448-nm diode laser and detected at 460–520 nm.
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5

3D Confocal Imaging of Cilia

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Z-stack images of cilia were collected with a Leica SP8 confocal microscope in resonant scanning mode using a 63× NA 1.4 objective. Images were collected in 0.2 μm thick slices and pixel size for each stack was kept at 45 nm × 45 nm. The images were then deconvolved using Lightning Deconvolution module in Leica Application Software (LAS X). Cilia lengths were then measured in a three-dimensional space using 3D measurement module in LAS X by manually tracing along the lengths of the cilia.
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6

FRAP Analysis of Cardiomyocyte Thin Filaments

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A Leica SP5-II confocal microscope with a ×63 NA 1.4 objective and a 488-nm argon laser was used for FRAP experiments. Cardiomyocytes were plated on Matrigel-coated (1:1000), glass-bottomed dishes (MatTek), and were maintained at 37 °C and ∼5% CO2 for the duration of the experiment. Three prebleach images were recorded, followed by photobleaching for ∼2 s at 80% total laser power. To monitor recovery after photobleaching, images were captured in successive intervals of 1 s (for a duration of 30 s), 5 s (for a duration of 150 s), and 10 s (for a duration of 600 s). Images were imported into Leica LASX software and analyzed as described previously15 . Mobile fractions and halftimes were determined from nonlinear regression curves best fit using a two-exponential association equation R = Mfast×[1−exp(−kfast × t)]+Mslow×[1−exp(−kslow × t)] with Prism 8.4.1 software (GraphPad Software, Inc., San Diego, CA). R is the relative recovery at time t, M is the mobile fraction and k is the rate constant. Half times (tfast or tslow) are 0.69/k. Recovery was determined independently at three barbed and pointed thin filament ends per cell. If fitting the two-phase exponential equation to the fluorescence recovery data did not provide an R2 value > 0.70 or did not converge, the calculated parameters were deemed unreliable and not included in analysis.
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