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3 protocols using c fos

1

Optimized Primer Design for Gene Expression

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The primers of CpG ODN 2006, β-actin, Nfatc, c-fos, RANK, matrix metalloproteinase 9 (MMP9), and 6-carboxyfluorescein (FAM)-labeled ODN (ODN and phosphorothioate ODN) were synthesized by TaKaRa Bio (Dalian, China), and the sequences are listed in Table 1. These FAM-labeled ODNs shows green signal when excited by blue light. N-Ac-L-Leu-PEI and branched PEI25K (Sigma–Aldrich, St. Louis, USA) were provided by the School of Life Sciences, Jilin University (Jilin, China). The PrimerScript® RT reagent kit and SYBR Green Premix Ex Taq kit were purchased from TaKaRa Bio (Dalian, China). Antibodies to Nfatc, c-fos, RANK, MMP9, β-actin, and horseradish peroxidase (HRP)-conjugated goat anti-rabbit secondary antibodies were all purchased from ABclonal (Boston, MA, USA). The RAW264.7 cells (SCSP-5036) were purchased from the cell bank at the Chinese Academy of Sciences (Shanghai, China).

The Primer Sequences of CpG ODN 2006, β-Action, Nfatc, c-fos, RANK and MMP9

NameSequence
20065ʹ-TCGTCGTTTTGTCGTTTTGTCGTT-3’
β-actin5ʹ-CATCCGTAAAGACCTCTATGCCAAC-3ʹ5ʹ-ATGGAGCCACCGATCCACA-3’
Nfatc5ʹ-CAAGTCTCACCACAGGGCTCACTA-3ʹ5ʹ-TCAGCCGTCCCAATGAACAG-3’
c-fos5ʹ-ACGTGGAGCTGAAGGCAGAAC-3ʹ5ʹ-AGCCACTGGGCCTAGATGATG-3’
RANK5ʹ-GGCTTACCTGCCCAGTCTCATC-3ʹ5ʹ-AAGCATCATTGACCCAATTCCAC-3’
MMP95ʹ-GCCCTGGAACTCACACGACA-3ʹ5ʹ-TTGGAAACTCACACGCCAGAAG-3’
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2

Osteoclastogenesis Pathway Molecular Assays

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The 12 ODNs, 2006, β-actin, Nfatc, c-fos, RANK, MMP9, and FAM labeled ODNs were synthesized by Takara (Dalian, China), and the sequences are listed in ESI Table 1. The PrimerScript® RT reagent kit and SYBR Green Premix Ex Taq kit were purchased from Takara. The antibodies (cyclin A2, cyclin B1, cyclin D1, cyclin E1, Nfatc, c-fos, RANK, MMP9, OPG, RANKL, β-actin, and horseradish peroxidase-conjugated goat anti-rabbit secondary antibodies) were all purchased from ABclonal (Boston, USA).The RAW264.7 cells (SCSP-5036) were purchased from Cell library of Chinese Academy of Sciences.
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3

Quantitative RT-PCR Analysis of Gene Expression

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Total RNA (1500 ng) was reverse-transcribed using the Prime-Script RT Reagent Kit (Takara Bio Inc, Otsu, Japan) according to the manufacturer's instructions.
Quantitative real-time polymerase chain reaction was performed in a 10-mL reaction mix using SYBR Premix Ex Taq II (Takara Bio Inc) with the Thermal Cycler Dice Real Time System (Takara Bio). The contents of the amplification mix and thermal cycling conditions were set according to the manufacturer's instructions. The primers for C-fos, HSP70, tumor necrosis factor a (TNF-a), IL-6, IL-8, L-selectin, MMP-2, MMP-9, NOX1, MPO, ITGAL, and Rac1 were purchased from Takara Bio. The second-derivative maximum method was used to perform the relative quantification of mRNA transcripts. The expression levels of the target transcripts were described as the ratios of the targets normalized to the endogenous reference (glyceraldehyde 3-phosphate dehydrogenase).
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