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62 protocols using sphingosine 1 phosphate (s1p)

1

Preparation of S1P Stock Solutions

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To prepare stock solution of sphingosine-1-phosphate (S1P), S1P (Cayman) was dissolved in 1X Dulbecco's phosphate-buffered saline (DPBS) (Corning) with 0.3 M NaOH (Sigma-Aldrich) at 10 mM. To make stock solution of S1P associated with fatty acid-free Bovine Serum Albumin (BSA) (Sigma) carrier proteins, S1P (Avanti Polar Lipids) was resuspended in a methanol: water solution (95:5 volumetric ratio) and heated to 65 °C with sonication to form a 0.5 mg mL−1 S1P solution. This solution was then dried with dry nitrogen stream. The dried S1P residue was dissolved in 1X PBS with 4 mgmL−1 fatty acid free BSA to a final concentration of 125 µM S1P. Stock solution of W146 (Cayman) was prepared by dissolving in DMSO at 50 mM. Stock solution of JTE-013 (Cayman) was prepared by dissolving in DMSO at 10 mM.
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2

Preparing Sphingosine-1-Phosphate Stock Solutions

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To prepare stock solution of sphingosine-1-phosphate (S1P), S1P (Cayman) was dissolved in 1X Dulbecco’s phosphate-buffered saline (DPBS) (Corning) with 0.3 M NaOH (Sigma-Aldrich) at 10 mM. To make stock solution of S1P associated with fatty acid-free Bovine Serum Albumin (BSA) (Sigma) carrier proteins, S1P (Avanti Polar Lipids) was resuspended in a methanol: water solution (95:5 volumetric ratio) and heated to 65 °C with sonication to form a 0.5 mg mL−1 S1P solution. This solution was then dried with dry nitrogen stream. The dried S1P residue was dissolved in 1X PBS with 4 mgmL−1 fatty acid free BSA to a final concentration of 125 μM S1P. Stock solution of W146 (Cayman) was prepared by dissolving in DMSO at 50 mM. Stock solution of JTE-013 (Cayman) was prepared by dissolving in DMSO at 10 mM.
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3

Immunoblotting of Signaling Proteins

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Anti-EDG-1 (rabbit polyclonal, SC-25489), anti-UCP1 (goat polyclonal, M-17: SC-6529) antibodies were from Santa Cruz Biotechnology, Inc. anti-β Tubulin (rabbit polyclonal, #2146) anti-phospho-Akt (rabbit polyclonal, 9271s) and anti-phospho-STAT3 (rabbit polyclonal, #9131), were from Cell Signaling Technology (Beverly, MA, USA). The antibody solution was 1:1000 for Western blots. Protein A-Sepharose 6 MB and nitrocellulose paper (Hybond ECL, 0.45 mm) were from Amersham Pharmacia Biotech United Kingdom Ltd. (Buckinghamshire, United Kingdom). S1P was from Avanti Polar Lipids Inc. (Alabama, EUA) and SEW2871 was from Cayman Chemical (Michigan, USA).
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4

Dissecting Sphingosine-1-Phosphate Signaling

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Tumor necrosis factor (TNF)-α was from PeproTech GmbH, Hamburg, Germany; lipopolysaccharide (LPS; E. coli 0111:B4), oligonucleotide primers, LY294002, and U0126 were from Sigma Aldrich, Switzerland; S1P, VPC23019, W146, and JTE-013 were from Avanti Polar Lipids Inc., Alabaster, AL, USA; FTY720 was from Cayman Chemicals Inc., Ann Arbor, MI, USA; Symbiobacterium thermophilum S1P lyase was produced and purified as previously described (Huwiler et al. 2011) ; and all cell culture nutrients and CellTracker™ Green BODIPY R (8-chloromethyl-4,4difluoro-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-S-indacene) were from Invitrogen/Life Technologies, Basel, Switzerland.
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5

Lipid Reconstitution for Antibody Binding Assays

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The murine antibody, 504B3, was purchased from Echelon Biosciences (Salt Lake City, UT, USA). All lipid species including, 1-oleoyl-LPA (18:1), 1-palmitoyl-LPA (16:0), 1-oleoyl-lysophosphatidylcholine (18:1 LPC), 1,2-dioleoyl-PA (18:1–18:1), and sphingosine 1-phosphate (d18:1) (Fig. 1) were purchased from Avanti Polar Lipids Inc. (Alabaster, AL, USA). Approximately 95–97% of LPA is lost when reconstituted without BSA [23 (link)] or suitable organic solvents. Therefore, stable lipids (i.e.,16:0 LPA) were dissolved in EtOH:H2O (1:1 v/v), and unstable and highly hygroscopic lipids (i.e., 18:1 LPA, 18:1 LPC, 18:1–18:1 PA) were desiccated, then reconstituted in EtOH:H2O (1:1 v/v solution) to prepare 5 mM stock solutions. 18:1 S1P was dissolved in methanol, desiccated, and reconstituted in 0.4% BSA according to the manufacturer’s instructions.

Chemical structure of ligands used in the binding assays against the anti-LPA antibody, 504B3. Lipids varied by acyl chain length (16:0, 18:1 LPA), head group (18:1 S1P, 18:1 LPC), or the presence of a 2nd acyl chain (18:1–18:1 PA)

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6

Comprehensive Lipid Standards Acquisition

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HPLC-grade methanol, acetonitrile, water, chloroform, and isopropyl alcohol were purchased from J.T. Baker (Phillipsburg, NJ, USA). HPLC-grade formic acid, hydrochloric acid, ammonium formate, and acetic acid were purchased from Sigma-Aldrich (St. Louis, MO, USA). Lipid standards used in this study were purchased from Larodan Fine Chemicals AB [Cholesteryl ester; CE (10:0), Monoacylglycerols; MG (15:1), Diacylglycerols; DG (8:0-8:0), Triacylglycerols; TG (11:1-11:1-11:1)] and Avanti Polar Lipids, Inc. [Phosphatidylcholine; PC (10:1-10:1), LysoPhosphatidylcholine; LPC (13:0), Phosphatidylethanolamine; PE (10:1-10:1), Lysophosphatidylethanolamine; LPE (14:0), Phosphatidylglycerol; PG (10:1-10:1), Lysophosphatidylglycerol; LPG (14:0), Phosphatidic acid; PA (10:1-10:1), LysoPhosphatidic acid; LPA (17:0), Phosphatidylserine; PS (10:1-10:1), Lysophosphatidylserine; LPS (17:1), Phosphatidylinositol; PI (16:0), Lysophosphatidylinositol; LPI (13:0), Ceramide; Cer (d18:1-12:0), Dihydroceramide; dCer (d18:0-12:0), Ceramide-1-phosphate; Cer1P (d18:1-12:0), Dihydroceramide-1-phosphate; dCer1P (d18:0-16:0), Sphingosine; SO (17:1), Sphinganine; SA (17:0), Sphingosine-1-phosphate; SO1P (17:1), Sphinganine-1-phosphate; SA1P (17:0), Sphingomyelin; SM (d18:1-12:0), Dihydrosphingomyelin; dSM (d18:1-12:0)].
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7

Lipid-Binding Protein Preparation for Cell Culture

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Palmitic acid (PA) and oleic acid (OA) were dissolved in sterile DMSO then mixed with fatty acid-free bovine serum albumin (BSA) (all from Sigma) in serum-free medium for 15 min at room temperature2 (link),10 (link). The molecular ratio of BSA to PA was 1–5.3 when using 400 mM palmitic acid, and 1–2.65 when using 200 mM PA. Cells were then cultivated in this serum-free media containing PA for 6, 18 or 24 h prior to analysis. An equivalent percentage of DMSO was used as a vehicle control in the experiments. S1P (Avanti Lipids) was dissolved in serum-free medium containing fatty acid free BSA and sonicated in a water bath at 37 °C. S1P aliquots were prepared at 100 μM and stored at −80 °C.
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8

Preparing S1P for C. elegans Studies

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S1P (Avanti Lipids) was dissolved in butanol:methanol (3:1) and sonicated in a water bath at 55 °C. S1P stock solution (1.32 mM) was further stored at −80 °C. Plates containing S1P were prepared by adding stock solution of S1P to cooled NGM after autoclaving78 . For injections, 1 µM S1P was directly injected into the C. elegans gonad.
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9

Comprehensive Metabolite and Lipid Analysis

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Reverse-osmosed ultrapure water was obtained from a Milli-Q Plus185 system (Millipore, Billerica, MA, USA). A MS grade methanol (MeOH), used for standards preparation, and acetonitrile (ACN) were obtained from Fisher Scientific (Hampton, NH, USA). Analytical grade ammonia solution (28%, GPR RECTAPUR®) and acetic acid glacial (AnalaR® NORMAPUR®) were obtained from VWR Chemicals (Radnor, PA, USA).
Arachidonic acid, LPC 14:0, LPC 16:0, LPC 17:0, LPC 17:1, LPC 18:0, LPC 18:1, LPC 19:0, LPE 18:0, LPI 16:0, LPI 20:4, palmitoleic acid, oleamide, SPA-1P, sphinganine-C17, sphingosine, S1P, sphingosine d7, LPC 18:1 d7 were purchased from Avanti lipids (Birmingham, AL, USA). Bilirubin, lactic acid, lauric acid, oleic acid, adenosine, arginine, betaine, carnitine, cortisol, creatine, creatinine, hexanoylcarnitine, hippuric acid, hypoxanthine, leucine/isoleucine, phenylalanine, proline, propionylcarnitine, urea, carnitine d3, isoleucine d7, and palmitic acid d31 were purchased from Sigma-Aldrich (Darmstadt, Germany). phenylalanine d5 and valine d8 were purchased from Cambridge Isotope Laboratories Inc. (Andover, MA, USA).
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10

Lipid Preparation for Cell Culture

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Palmitic acid (PA) and oleic acid (OA) were dissolved in sterile DMSO then mixed with fatty acid-free bovine serum albumin (BSA) (all from Sigma) in serum-free medium for 15 min at room temperature (Ruiz et al., 2021; Ruiz et al., 2019) . The molecular ratio of BSA to PA was 1 to 5.3 when using 400 mM palmitic acid, and 1 to 2.65 when using 200 mM palmitic acid. Cells were then cultivated in this serum-free media containing palmitic acid for 6, 18 or 24 h prior to analysis. An equivalent percentage of DMSO was used as a vehicle control in the experiments. S1P (Avanti Lipids) was dissolved in serum-free medium containing fatty acid free BSA and sonicated in a water bath at 37°C. S1P aliquots were prepared at 100 μM and stored at -80°C.
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