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5 protocols using mouse anti gapdh

1

Plasmid and Antibody Protocol for Cell Signaling

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The following plasmids, antibodies and oligos were used: rabbit anti-HA (6908, Sigma-Aldrich, St. Louis, MO, USA), mouse anti-HA(12CA5) (sc-57592, Santa Cruz Biotechnology, Santa Cruz, CA, USA), mouse anti-GFP (G1546, Sigma-Aldrich, St. Louis), mouse anti-GAPDH (G8140, US Biological, Salem, MA, USA), mouse anti-ORF59 (gift from Dr. Bala Chandran), rabbit anti-control IgG (sc-2027, Santa Cruz Biotechnology), mouse anti-control IgG (sc-2025, Santa Cruz Biotechnology), rabbit anti-JMJD3 (3457S, Cell Signaling Technology, Danvers, MA, USA), rabbit anti-UTX (33510S, Cell Signaling Technology), control LacZ oligo (Protein and Nucleic Acid Facility, Stanford University), and PAN oligos (Protein and Nucleic Acid Facility, Stanford University). Plasmids pCS2-UTX-Flag and pCS2-JMJD3-Flag were purchased from Addgene.
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2

Antibody Characterization for Molecular Studies

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The following antibodies were used: mouse anti-Flag (M2, Sigma-Aldrich, St. Louis, MO), rabbit anti-Flag (F7425, Sigma-Aldrich, St. Louis), mouse anti-RTA (mouse hybridoma), mouse anti-LANA (mouse hybridoma), mouse anti-Myc (mouse hybridoma), rabbit anti-HA (6908, Sigma-Aldrich, St. Louis, MO), mouse anti-HA12CA5 (sc-57592, Santa Cruz Biotechnology), mouse anti-GFP (G1546, Sigma-Aldrich, St. Louis), mouse anti-GAPDH (G8140, US Biological, Salem MA), and rabbit anti-Myc (SAB4300605, Sigma-Aldrich, St. Louis, MO), goat anti-PRMT5 (C-20, sc-22132, Santa Cruz Biotechnology), mouse anti-ORF59 (generous gift from Dr. Bala Chandran), rabbit anti-Control IgG (sc-2027, Santa Cruz Biotechnology), mouse anti-Control IgG (sc-2025, Santa Cruz Biotechnology), rabbit anti-H4R3me2s (61187, Active Motif, Carlsbad CA), rabbit anti-Histone H4 (#61299 Active Motif), rabbit-anti-PRMT5 antibody (#61001 Active Motif), rabbit anti-control IgG (ChIP grade—Cell Signaling Technology #2729, rabbit anti-COPR5 antibody (Novus Biologicals #NBP2-30884), and additional rabbit-anti ORF59 antibody custom synthesized for our lab by GenScript.
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3

Antibody Panel for KSHV Protein Detection

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The following commercial antibodies were used for this study: rat anti-LANA (Advanced Biotechnologies, Inc.), mouse anti-GAPDH (US Biological), mouse anti-Flag M2 (Sigma-Aldrich, St. Louis, MO, USA), mouse anti-Myc 9E10 (Sigma-Aldrich, St. Louis, MO, USA), rabbit polyclonal anti-NAP1L1 (Santa Cruz Biotechnology), mouse monoclonal anti-NAP1L1 (Santa Cruz Biotechnology). Mouse monoclonal anti-LANA antibody was generated at GenScript. Mouse anti-ORF59 and rabbit anti-RTA antibodies were generously provided by Dr. Bala Chandran, Rosalind Franklin University of Medicine and Science, Chicago and Dr. Yoshihiro Izumiya, UC Davis, respectively. Mouse anti-K8 antibody was obtained from Dr. Rossetto’s laboratory (University of Nevada, Reno, NV).
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4

Immunological Profiling of Autoantibodies

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Anti-nuclear antibodies including anti-dsDNA, -ssDNA, -nucleosomes or -histones were measured as previously described (22 (link)). Total IgM and IgG isotypes and cytokine/chemokine expression was quantified using Luminex-based assays (Affymetrix). Transcription factor analysis was accomplished using Nuclear Extraction and Procarta Transcription Factor Plex Kits according to manufacturer’s instructions (Affymetrix). Immunoblot analysis was performed as previously described (26 ) and the concentration of the primary antibodies were as follows: rabbit anti-IRF3 (1:1000, Cell Signaling), rabbit anti-IRF7 (1 mg/mL, Abcam) and mouse anti-GAPDH (1:500, US Biological) antibodies.
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5

Antibody Utilization in Protein Analysis

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The following commercial antibodies were used: Mouse anti-EGFL7 (sc-373898, Santa Cruz, USA), Rabbit anti-EGFL7 antibody (ab115786, Abcam), mouse anti-Daxx (sc-8043, Santa Cruz), rabbit anti-Ets1 (sc-350, Santa Cruz), mouse anti-GAPDH (US Biological, USA), mouse anti-Flag M2 (Sigma Aldrich, USA) and mouse anti-Myc 9E10 (Sigma-Aldrich). Mouse anti-LANA monoclonal antibody was generated at Genscript (USA).
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