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Click it plus edu alexa fluor 488 imaging kit

Manufactured by Thermo Fisher Scientific
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The Click-iT Plus EdU Alexa Fluor 488 Imaging Kit is a laboratory tool used for DNA synthesis detection. It incorporates the EdU (5-ethynyl-2'-deoxyuridine) molecule, which is a thymidine analog, into newly synthesized DNA. The incorporated EdU is then labeled with the Alexa Fluor 488 dye, allowing for the visualization and analysis of DNA synthesis activity within cells.

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47 protocols using click it plus edu alexa fluor 488 imaging kit

1

Immunofluorescent Analysis of FoxK1 Expression

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Cells grown on glass coverslips were fixed with 4% formaldehyde for 15 min at room temperature, rinsed three times in PBS plus 0.3% Triton for 5 min and blocked in 5% BSA for 30 min at room temperature. Cells were then incubated with anti-FoxK1 antibody (Abcam ab18196) and secondary antibody coupled to AlexaFluor 488 (Life Technologies). Cells were mounted on glass slides using Vectorshield hard set mounting medium (Vector Laboratories). Images were acquired with a two-photon confocal microscope (Zeiss 710). For EdU incorporation assay, cells were treated with 10 μM EdU (8 h) and stained with Click-iT Plus EdU Alexa Fluor 488 Imaging Kit (Thermo Fisher).
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2

Cell Cycle Progression Analysis via EdU Labeling

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5‐Ethynyl‐2′‐deoxyuridine (EdU) labeling was carried out using the Click‐iT Plus EdU Alexa Fluor 488 Imaging kit (C10637; Thermo Scientific). Cells were cultured with 10 nmol/L EdU for 1 h. Harvested cells were fixed with 4% PFA (18814‐10; Polysciences) diluted with PBS, for RT and 30 min at 4°C following 10 min at RT. After fixation, cells were washed with 3% BSA (013‐27054; Wako) dissolved with PBS. Then incubated with 0.5% Triton‐X (168‐11805; Wako) diluted with PBS for 20 min at RT. Detection of incorporated EdU was carried out in accordance with the manufacturer's protocol. Cells were treated with RNase, and stained with propidium iodide. Flow cytometry was performed using a FACSVerse flow cytometer (BD Biosciences). Cell cycle profile was analyzed using BD FACSDiva™ software (BD Biosciences).
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3

Serum Starvation and Cell Cycle Progression

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For serum starvation, cells were cultured for 24 h in DME-HG/F-12 with 1% penicillin–streptomycin but no other additive. Cells were then released into regular culture media at the indicated time interval. To detect mitotic DNA synthesis, EdU was added to the media for another 1 h incubation before fixation and permeabilization as described in the immunofluorescence section. EdU was detected using Click-iT® Plus EdU Alexa Fluor® 488 Imaging Kit (C10637, Thermo Fisher Scientific) following manufacturer’s instructions, except that CuSO4, Alexa Fluor® azide and reaction buffer additive were used at half of the instructed final concentrations. Slides were mounted in Prolong with DAPI (P36935, Thermo Fisher Scientific). Mitotic cells were detected by microscopy. More than 80 mitotic cells from at least three independent experiments were scored.
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4

Measuring Tendon Fibroblast Proliferation

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Edu staining was performed using Click-iT Plus EdU Alexa Fluor™ 488 Imaging kit (Thermo Fisher Scientific). Nuclei were stained by Hechst 33324 (Thermo Fisher Scientific) and Edu-positive cells were measured in Achilles tendons. Results are expressed as percentage of Edu-positive cells relative to the total number of tendon fibroblasts.
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5

Quantifying Cell Proliferation in Arabidopsis

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Five-day-old seedlings were grown on MS plates supplemented with or without 0.6 µg/ml bleomycin for 12 hr. Seedlings were then transferred to liquid MS medium with or without bleomycin and with 20 µM EdU, followed by a 15 min incubation. After washing with MS medium, seedlings were transferred again to MS medium supplemented with or without bleomycin. EdU staining was conducted with a Click-iT Plus EdU Alexa Fluor 488 Imaging Kit (Thermo Fisher Scientific) according to the manufacturer’s instructions, and nuclei were stained with DAPI.
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6

Quantifying Beta Cell Proliferation and Apoptosis

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For a modified 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay, cells were plated in 96-well plates (104 cells in each well). The cell number was determined using the CellTiter 96 Non-Radioactive Cell Proliferation Assay (Promega, Madison, WI, USA) according to the manufacturer’s instructions. For the EdU incorporation assay, islets were treated with 10 μmol/l EdU (24 h for mouse islets and 48 h for human islets) and stained with anti-insulin antibody (Abcam, Cambridge, MA, USA, ab7842, ×400) and the Click-iT Plus EdU Alexa Fluor 488 Imaging Kit (Thermo Fisher, Waltham, MA, USA). TUNEL staining was performed using the ApopTag Fluorescein In Situ Apoptosis Detection Kit (EMD Millipore, Temecula, CA, USA). The images were taken using a FluoView FV1000-D confocal laser scanning microscope. The proliferating beta cells were measured for 500 or more insulin-positive islet cells per mouse, or 50 or more human islets (containing more than 12,000 beta cells) per donor in each of the groups. For TUNEL staining, at least 10,000 cells per group were analysed.
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7

Measuring Proliferation with Click-iT EdU Assay

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The proliferation of NRK‐49F cells was determined using the Click‐iT plus EdU Alexa Fluor 488 Imaging Kit (Thermo Fisher Scientific). Briefly, cells were treated as indicated and incubated with 10 μM EdU for 6 h before fixation and permeabilisation. Finally, the cells were stained with EdU reaction solution. Cell nuclei were counterstained with Hoechst 33258 (Beyotime, Cat. C0003‐2) for 30 min. Images were taken by confocal microscopy (Leica TCS SP2 AOBS, Leica Microsystems, Buffalo Grove, IL).
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8

Corneal Endothelium Proliferation Imaging

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EdU labeling was detected using the Click-iT Plus EdU Alexa Fluor 488 Imaging Kit (Thermo Fisher Scientific), conforming to the manufacturer's protocol. After permeabilizing the cells with 1% Triton X-100 and blocking with 3% BSA in PBS, the endothelial side of the corneal buttons was covered with the EdU reaction cocktail and incubated for 30 minutes at RT. Subsequently, the corneas were incubated for 1 hour at 37 °C with Ki67 primary antibody (monoclonal mouse anti-human, MIB-1, unconjugated) (Dako, Glostrup, Denmark, M724029-2) diluted 1:200 in 3% BSA in PBS. The secondary antibody was goat anti-mouse conjugated with Alexa Fluor 555 (Thermo Fisher Scientific), diluted 1:500 in 3% BSA in PBS, and exposed to the endothelial side of the cornea for 45 minutes at 37 °C. Cell nuclei were stained with 4′,6-diamidino-2-phenylindole (5 µM in PBS; Nordic Biosite, Copenhagen, Denmark). Four radial incisions divided the superior, inferior, nasal, and temporal quadrants, and the corneas were flat mounted endothelial side up on a glass slide and covered with Vectashield mounting medium (Vector Laboratories, Inc. Burlingame, CA) and a cover slip.
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9

Cell Proliferation Assay in 3D Hydrogels

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Cell proliferation within 3D hydrogels (n=4) at days 1, 4 and 7were assessed qualitatively and quantitatively using Click-iT Plus EdU Alexa Fluor® 488 Imaging Kit (Thermo Fisher Scientific). Cell-laden hydrogels were incubated with 10 μM EdU at 37°C for 24 hours. The samples were then fixed with 4% paraformaldehyde (PFA) for 30 min and permeabilized with 0.5% Triton X-100 (Sigma-Aldrich) for 40 min. Click-iT Plus reaction cocktail was added into the samples and incubated for 40 min in the dark. After another rinse with 3% bovine serum albumin (BSA), the samples were stained using Hoechst 33342 (1:2000) at room temperature. CFs cultured on 2D well plates (5000 cells/well, n=4) were taken as control. A confocal microscope (Leica SP5 X MP, Germany) was used to take fluorescence images of the samples. Acquisition parameters were not changed throughout the imaging of each experiment. The amount of EdU positive cells and Hoechst positive cells were analyzed using the ImageJ program, respectively. The value obtained from the EdU positive cells divided by the total number of Hoechst positive cells was determined to be the percentage of cell proliferation.
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10

Quantifying DNA Replication after SASE Manipulation

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To assess DNA reduplication after SASE gene knockdown or gene overexpression, MEFs were seeded on 10-well chambered slides at 2,000 cells/well and infected as described above. Forty-eight hours after the first infection, medium was replaced with medium containing 1 μM EdU (5-ethynyl-2′-deoxyuridine, Carbosynth, #NE08701) and cells were allowed to incorporate EdU for 48 h. Four days after the first infection, cells were fixed and subjected to EdU staining according to the manufacturer’s instructions (Thermo Scientific, ClickiT Plus EdU Alexa Fluor 488 Imaging Kit, #C10637). To assess the proportion of proliferating non-senescent MEFs after gene knockdown or overexpression, virus-infected cells were seeded as described and allowed to incorporate EdU for 24 h. Cells were counterstained with Hoechst. At least 100 cells per sample were counted to determine the proportion of EdU-positive cells. We note that due to the experimental setup some shScr control values may be used for multiple gene knockdown comparisons when they were run in the same experiment.
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