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30 protocols using normal mouse serum

1

Polysaccharide-Specific Sandwich ELISA for PnPs

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A polysaccharide-specific Sandwich ELISA was employed to screen the anti C-Ps mAb against several PnPs serotypes as described previously [31 (link)]. In this ELISA assay, the plates were coated with a CRM capture mAb (1 μg/mL). At 2–8 °C, the coated plates were blocked and incubated overnight with serially diluted target PnPs serotypes. After the plate wash, the anti C-Ps mAb (1 μg/mL) was applied to the plates and they were incubated for one hour. The plates were washed, then incubated for one hour with 1:6000 dilution of donkey anti-human antibody conjugated with alkaline phosphatase (Jackson ImmunoResearch, West Grove, PA, USA) in a solution of assay diluent spiked with normal mouse serum (Jackson ImmunoResearch). The plates were washed, 4-Methylumbelliferyl-phosphate (4-MUP) (Virolabs, Chantilly, VA, USA) was applied, and they were incubated for 45 min. The fluorescence signal was recorded on a SpectraMax M2E spectrophotometer at 360 nm (excitation)/450 nm (emission). Data were collected using SoftMax Pro (Molecular Devices, San Jose, CA, USA).
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2

Quantifying T-cell Infiltration in Tumors

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Tumors were harvested at an average tumor size of 150-200 mm3 and snap frozen. Tissues were cryosectioned at 8 µm and immunohistochemical (IHC) experiments were conducted as follows: slides were fixed in cold acetone or 4% formalin, blocked in 5% normal mouse serum (Jackson Immunoresearch) and incubated with primary antibodies for 1.5 h at room temperature. Primary antibodies were anti-CD3 (Dako, A0452, #280), anti-CD4 (Affymetrix, #14-0042) and anti-CD8a (Affymetrix, #14-0081). Sections were dried and stained with haematoxylin/eosin in a Leica ST4040 automatic stainer.
Assessment of T cell infiltration was performed in a blinded fashion and scored as 0 (negative), 1 (<150 cells per mm2), 1-2 (150-300 cells per mm2), 2 (300-500 cells per mm2, 2-3 (500-800 cells per mm2), and 3 (>800 cells per mm2). N=3 per syngeneic tumor model.
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3

Bacterial Infection Protocols for S.Tm and Mtb

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For infections with S.Tm, the bacteria were pelleted and resuspended in PBS followed by measuring the OD600 of the suspension. Bacteria for the infection were opsonized by taking 45 μL of bacterial culture, mixing with 20 μL of normal mouse serum (Jackson ImmunoResearch) and 135 μL of DMEM with 10% normal FBS (Gibco) for 20 minutes. This was followed by adding an additional 600 μl of DMEM with 10% normal FBS, and then adding the desired bacteria to the cells at an MOI of 10. The plate was spun at 100 × g for 5 minutes then incubation at 37°C for 30 minutes. The cells were washed three times with PBS, fixed with PFA 4% for 1 hour at room temperature. The cells were washed 3 times in PBS and mounted with Prolong mounting medium with DAPI (Molecular probes).
For infections with Mtb, the bacteria were pelleted and washed in PBS-tween80 0.05%. The OD600 was measured, and the bacteria were added on the cells at an MOI of 10. The plate was then spun at 200 × g for 5 minutes and incubated for 1 hour. The cells were washed three times with PBS and incubated with fresh complete medium. At the designated time post-infection, the cells were then washed three times with PBS, fixed with PFA 4% for 1 hour at room temperature. Finally, the cells were washed 3 times in PBS and mounted with Prolong mounting medium with DAPI.
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4

Transcriptomic Analysis of Skin T Cells

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Twenty-four hours post last TPA application, animals were euthanized, and cells isolated from dorsal skin as described for phenotypic analysis. The cell pellet was resuspended in HBSS and stained with 4′, 6-diamidino-2-phenylindol (Sigma D9542) to exclude dead cells. Cells were preincubated with FcBlock (BD Biosciences, 553141), 0.2 mg/mL purified rat IgG and 1 mg/mL of normal mouse serum (Jackson Immuno Research, 015-000-120). Thereafter, the following antibodies were added: CD45 Pacific Blue (clone 30-F11, BD Biosciences), CD3 FITC (clone 145-2C11, e-Bioscience), and NK tetramer APC (kindly provided by Jeff Subleski). After staining, cells were washed and resuspended in sorting buffer (HBSS, 1% BSA, 55 μmol/L 2-mercaptoethanol, 20 mmol/L HEPES) and subjected to FACS sorting. Cells were gated on FSC/SSC/Alive/CD45+/CD3+/NK tetramer negative and collected in 200 μL of TRIzol LS reagent (Ambion, 10296010). Total RNA from sorted T cells was prepared using the Direct-zol RNA MiniPrep Kit (Zymo Research, R2060) according to the manufacturer’s instructions. Total RNA was amplified and subjected to microarray procedure using Affymetrix whole-genome mouse arrays 430 2.0. Data files were analyzed using BRBArrayTools (Biometric Research Branch, NCI).
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5

Single Cell Sorting of Antigen-Specific B Cells

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The isolated leukocytes were labeled with biotinylated HA, followed by streptavidin-APC (BD Biosciences). In addition, the following surface markers were used: CD3e-V450 (500A2), CD4-V450 (RM4-5), CD8a-V450 (53-6.7), CD11b-V450 (M1/70), IgD-V450 (11-26c.2a), Gr1-V450 (RB6-8C5), CD19-PE-Cy7 (1D3), CD138-PE (281-2) and IgM-FITC (R6-60.2) (BD Biosciences, San Jose, CA). All staining was performed in the following antibody dilution buffer: Hank’s Balanced Salt Solution (HBSS) containing 5 % FBS (Hyclone), 10 mM of EDTA, 10mM of HEPES, 1% Fc Block (BD Biosciences, San Jose, CA) and 5% each of normal hamster serum, normal mouse serum and normal rat serum (Jackson ImmunoResearch). The optimal staining conditions identified were 5 μg/ml of biotinylated-HA and 1.25 μg/ml of streptavidin-APC.
Cells were analyzed using a BD FACS CANTO II, and single cell sorting was performed using a BD FACS Aria II. The cells were gated on FSC-A/FSC-H to remove doublets and FSC-A/SSC-A to remove debris. Single antigen-positive B cells were sorted based on IgM-/CD19+/HA+ surface staining onto the 48 reaction sites of an AmpliGrid AG480F slide (Beckman Coulter, Houston, TX). A visual analysis of cell deposition on the AmpliGrid AG480F slide using a microscope was used to monitor the accuracy of the sort.
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6

Engraftment Confirmation via Flow Cytometry

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For the confirmation of engraftment, 100μl of blood was collected from both Rag1 and BLT mice via tail vein bleed and treated with heparin. Blood was blocked with 7μl mouse blocking buffer [Normal mouse serum (Jackson ImmunoResearch Labs, West Grove, PA)), Rat anti-mouse CD16/CD32 (Mouse FC Receptor Monoclonal), Human gamma globulin (Jackson ImmunoResearch Labs)] for 5–8 minutes. 3μl each of the following monoclonal antibodies: FITC-conjugated anti CD45, PE-conjugated anti-CD3, and PE-Cy5-conjugated CD4 were added to each sample, vortexed, and incubated for 30 minutes at RT in the dark. Samples were lysed and washed following the Human Erythrocyte lysing kit and cells were fixed in 1% paraformaldehyde/DPBS for flow analysis. Samples were acquired using BD Acurri C6 flow cytometer (BD Biosciences, San Jose, CA) and analyzed using FlowJo V.X. software (Tree Star, Ashland, OR).
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7

Bacterial Infection Assay Protocol

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For infections with S. Tm, the bacteria were pelleted and resuspended in PBS followed by measuring the OD600 of the suspension. Bacteria for the infection were opsonized by taking 45 µl of bacterial culture, mixing with 20 µl of normal mouse serum (Jackson ImmunoResearch) and 135 µl of DMEM with 10% normal FBS (Gibco) for 20 min. This was followed by adding an additional 600 µl of DMEM with 10% normal FBS, and then adding the desired bacteria to the cells at an MOI of 10. The plate was spun at 100×g for 5 min then incubated at 37°C for 30 min. The cells were washed three times with PBS and fixed with PFA 4% for 1 h at room temperature. The cells were washed three times in PBS and mounted with Prolong mounting medium with DAPI (Molecular probes).
For infections with Mtb, the bacteria were pelleted and washed in PBS-tween 80 0.05%. The OD600 was measured, and the bacteria were added on the cells at an MOI of 10. The plate was then spun at 200×g for 5 min and incubated for 1 h. The cells were washed three times with PBS and incubated with fresh complete medium. At the designated time post-infection, the cells were then washed three times with PBS, fixed with PFA 4% for 1 h at room temperature. Finally, the cells were washed three times in PBS and mounted with Prolong mounting medium with DAPI.
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8

Measuring Circulating and Cellular Angpt-2 Levels

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The Angpt-2 concentration in cell culture supernatant or cell lysates was measured with a commercial human Ang2 DuoSet ELISA (DY628, R&D Systems, Minneapolis, MN). Except for normal mouse serum (Jackson ImmunoResearch Laboratories, Westgrove, PA) and Bovine Serum Albumin (BSA) (Sigma-Aldrich, St. Louis, MO) the required solutions were purchased from R&D Systems. In order to detect the circulating Angpt-2 concentration from murine blood an ELISA Kit for Angpt-2 from USCN (Wuhan, China) was used.
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9

Histological Analysis of Thymic Tissue

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Tissues were fixed in Bouin's fixative, embedded in paraffin, sectioned, and stained with hematoxylin and eosin. For immunofluorescence, sections of a tissue embedded in OCT freezing media were prepared on a CM3050s cryostat (Leica), adhered to Superfrost Plus slides (VWR), and subsequently permeabilized and blocked in PBS containing 0.3% Triton X-100 (Sigma-Aldrich) plus 10% normal mouse serum (Jackson ImmunoResearch Laboratories). Staining was performed with rabbit anti-K5 mAb (EP1601Y; Abcam) and rat anti-K8 mAb (TROMA-I; DSHB). Histological sections were evaluated (based on a 1–10 scoring system) for two parameters: cortical area that measures the distance from the thymic capsule to the corticomedulary border and convolution of the corticomedulary border that measures the length of the junction between cortex and medulla.
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10

Polysaccharide-Binding mAb Identification

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A two-day polysaccharide-specific sandwich ELISA was used to identify polysaccharide-binding mAbs.
Day one: An anti-polysaccharide mouse mAb (MSD proprietary) for capture were coated to plate at 1 μg/mL. Mouse antibody coated plates were washed, blocked, and then incubated overnight at 2–8 °C with serially diluted multivalent polysaccharides (Pneumovax23 positive control without adjuvant, MSD).
Day two: Recombinant human mAbs were diluted to 1 μg/mL and applied to plates for 1 h. Plates were washed, then incubated for one hour with 1:6000 dilution of donkey anti-human antibody conjugated with alkaline phosphatase (Jackson ImmunoResearch) in a solution of assay diluent spiked with normal mouse serum (Jackson ImmunoResearch). Plates were washed and 4-MuP substrate (Virolabs) was applied for 45 min, absorbance was read at 360 nm (excitation)/ 450 nm (emission) on a SpectraMax M2E spectrophotometer.
Raw data were collected using SoftMax Pro (V5.4, Molecular Devices), exported into Excel, and then analyzed with Prism (Graphpad).
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