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59 protocols using α smooth muscle actin

1

Histological Analysis of Cardiovascular Tissues

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Following perfusion with saline, hearts, kidneys and aortas were fixed in buffered formalin, embedded in paraffin, and sectioned according to standard procedures. All tissues were stained with hematoxylin and eosin, α-smooth muscle actin, Sirius red, F4/80, CD45, collagen 1 and collagen 3, (all Abcam, Cambridge, UK). Images were captured at 20x magnification, using a Panoramic Scanning 250 microscope and analysed blindly using Panoramic Viewer software (3D Histech Ltd., Budapest, Hungary). Five images of tissues were captured per mouse and staining was quantified as percentage of total area according to published methods using Image J software [17 (link)].
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2

Wound Healing Assessment in Rats

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Gross photographs of each rat wound were taken and the wound sizes were measured regularly after wounding. Ten rats, including the K sheets (n = 5) and the PV sheets (n = 5), were sacrificed on postoperative days 7, 14, 21, and 28, and the tissues from the previous wounds were harvested. Thereafter, 5-µm-thick sections were stained with hematoxylin–eosin and Masson’s trichrome stains (Sigma-Aldrich) and observed under a light microscope (Nikon co., Tokyo, Japan).
The tissues were stained with hematoxylin and eosin, Masson’s trichrome, and immunostained with CD31 (1:200 dilution, Novus International), Ki67 (1:200 dilution, Abcam), and α-smooth muscle actin (1:200, Abcam). The CD31 or Ki67-positive vessels were counted at a high-power field. The intensity of positive α-smooth muscle actin immunostaining was measured using the NIH ImageJ software (National Institutes of Health [NIH], Bethesda, MD, USA) and the relative intensities to normal buccal mucosa were compared among the different groups40 (link), 41 (link). Collagen density21 (link), 42 and epithelial thickness21 (link), 43 were measured in a blind manner in 10 randomly selected fields using the NIH ImageJ processing program.
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3

Immunohistochemical and ELISA Analysis

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Fluorescent-labelled antibodies for flow cytometry were from eBioscience. Immunoblot analysis and immunohistochemistry were performed with antibodies to Ki-67, MUC2 (GeneTex), active caspase 3, ERK1/2, phospho-ERK1/2, phospho-p38, phospho-JNK, phospho-NF-κB p65, phospho-STAT3, phosphor-Akt S473, phosphor-Akt T308 (Cell Signaling), β-catenin, HDAC1, NF-κB p65, p38 (Santa Cruz Biotechnology), CD11b, gp38, Lyve1, EpCam (eBioscience), CD31 (BD), α-smooth muscle actin (Abcam) and α-tubulin (Sigma). Secondary antibodies (host: donkey) for fluorescent microscopy labelled with Alexa 488 or 594 were from Life Technology. For ELISA analysis of IL-6, colonic tumors were cultured in DMEM containing 10% FBS for overnight and supernatant was analyzed by IL-6 ELISA kit from eBioscience. Cytokine concentration was normalized to the weight of tumors in each well.
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4

Elucidating Mesangial Cell Pathways

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A human mesangial cell line (HMC cell line, FH0241) was obtained from FuHeng Biology Co. (Shanghai, China). DHT (116064-77-8, purity ≥ 98%) was acquired from Krre Technology Co. (Beijing, China). Mannitol (69-65-8) was obtained from Macklin Biochemical Co. (Shanghai, China). The following antibodies: GAPDH (1:1000, ab8245), α-smooth muscle actin (1:1000, ab7817), Collagen I (1:1000, ab260043), Fibronectin (1:1000, ab2413), PI3KCA (1:1000, ab40776), PI3K (1:1000, ab191606), p-PI3K (1:1000, ab182651), AKT (1:1000, ab179463), and p-AKT (1:1000, ab192623) were bought from Abcam Co. (Cambridge, United Kingdom). Goat Anti-Rabbit IgG H&L (HRP, A0208), Rabbit Anti-Mouse IgG H&L (HRP, A0216), and Rabbit Anti-Mouse IgG H&L (Alexa Fluor 488, A0428) were purchased from Beyotime (Shanghai, China). DAPI Staining Solution (C1006) and Cell Counting Kit-8 (C0038) were also obtained from Beyotime (Shanghai, China). Glucose, Trypsin, Dulbecco’s Modified Eagle’s Medium (DMEM), and fetal bovine serum (FBS) were purchased from GIBCO. The Mouse Albumin ELISA Kit (ab207620) was purchased from Abcam.
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5

Bladder Urothelium and Detrusor Separation

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The urothelium + suburothelium was dissected from the detrusor smooth muscle using fine forceps under a dissecting microscope as previously described (Corrow et al., 2010 (link); Schnegelsberg et al., 2010 (link)). To confirm the specificity of our split bladder preparations, urothelium + suburothelium and detrusor samples were examined for the presence of α-smooth muscle actin (1:1000; Abcam, Cambridge, MA) and uroplakin II (1:25; American Research Products, Belmont, MA) by western blotting or reverse transcription PCR (Corrow et al., 2010 (link); Girard et al., 2011 (link); Girard et al., 2013 (link)). In urothelium + suburothelium layers, only uroplakin II was present (data not shown). Conversely, in detrusor samples, only α-smooth muscle actin was present (data not shown). In these studies, the use of the term urothelium refers to the urothelium and suburothelial layers.
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6

Immunohistochemical Analysis of Bladder Tissues

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Bladders were isolated, cut open into sheets, placed into cryo-molds, covered in optimal cutting temperature medium, and frozen on dry ice. Slide mounted sections (10 μm) were post-fixed in 4% paraformaldehyde and blocked with 10% donkey serum in 1× tris buffered saline + 0.1% Triton X-100. Sections were incubated overnight with antibodies against RXFP1, RXFP2 (Santa Cruz Biotechnology, Dallas, TX), α-smooth muscle actin (Abcam, Cambridge, MA) or Cav1.2 (Alomone Labs, Jerusalem, Israel) followed by incubation in Alexa Fluor (488 and 594 nm) anti-rabbit or goat IgG conjugates and DAPI for nuclear staining and examined using widefield or confocal fluorescence microscopy. For negative control, the primary antibody was omitted in the incubation solution. Refer to Supplemental Figure S11 for full details of antibodies.
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7

Bladder Dissection and Molecular Analysis

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The urothelium + suburothelium was dissected (Schnegelsberg et al. 2010 (link); Corrow et al. 2010 (link)) from the detrusor and the specificity of the split bladder preparations was examined for the presence of α-smooth muscle actin (1:1000; Abcam, Cambridge, MA) and uroplakin II (1:25; American Research Products, Belmont, MA) by western blotting or Q- PCR (Corrow et al. 2010 (link); Girard et al. 2011 (link); Girard et al. 2013 (link)). We determined PACAP and PAC1 transcript expression in the urinary bladder (urothelium + suburothelium, detrusor), lumbosacral (L1, L2, L5-S1) spinal cord and DRG of control and RVS mice (n = 8 each) using Q-PCR as described (Girard et al. 2011 (link); Girard et al. 2010 (link); Girard et al. 2013 (link)).
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8

Immunohistochemical Analysis of Mouse Eyeball

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Mouse eyeballs were enucleated and immediately fixed in 4% paraformaldehyde at 4°C overnight as previously described (Fu et al., 2018b (link)). After rinsed three times with PBS, the eyes were dehydrated and embedded in paraffin (Paraplast, Sigma-Aldrich, USA). Tissue slices (5 μm) were obtained using a rotation microtome (Thermo Fisher, USA), deparaffinized, and then rehydrated with graded ethanol for 5 min twice each. Antigen retrieval was conducted in citrate buffer. Once cooled, tissue sections were blocked with 10% goat serum and 0.2% Triton-X 100 in a dark and humid chamber for 2 h. After rinse briefly with PBS, the sections were immunolabeled with rabbit polyclonal antibody (α-smooth muscle actin, 1:100, Abcam) and incubated at 4°C overnight. After flushing, the samples were incubated with corresponding secondary antibodies (Alexa goat anti-rabbit 568, 1:500, Thermo Fisher) for 2 h. DAPI (Vector, CA) was used to visualize cellular nuclear. The slices were examined by the Keyence all-in-one fluorescence microscope (Itasca, USA) (Kasetti et al., 2016 (link)). For H&E staining, the paraffin section of mice TM tissues were sequentially deparaffinized, rehydrated, stained with hematoxylin and eosin (Sigma-Aldrich), dehydrated and sealed. The slices were visualized and photographed with phase contrast microscope (DMI 1, Leica).
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9

Fluorescent Imaging of Vascular Cells

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For fluorescent imaging, constructs were fixed in 4% paraformaldehyde at 4°C, permeabilized with 0.1% Triton X-100 solution for 10 minutes and blocked with 5% Donkey Serum for one hour. The constructs were subsequently labeled with α-smooth muscle actin (SMA) (Cat#: ab18147; Abcam Inc., Cambridge, MA), for CFs and MSCs or von Wilibrand’s Factor (vWF) (Cat#: ab6994; Abcam Inc.) and CD31 (Santa Cruz Biotechnology) as EC markers. Alexa Fluor 555 donkey anti-rabbit and Dylight 488 donkey anti-mouse were used as secondary antibodies for vWF and α–SMA, respectively (Jackson ImmunoResearch, West Grove, PA). In all fluorescent images cell nuclei were labeled with a DAPI stain (Hoechst, Sigma Aldrich). The samples were analyzed with an Olympus IX81 inverted fluorescent microscope. The resulting images (n=2–4 per sample, 3–5 samples per condition) were analyzed for EC sprout formation by individuals blinded to the group to which the images they were analyzing belonged using ImageJ (NIH, Bethesda, MD) (see supplemental information for further details).
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10

Immunohistochemical Analysis of Human Cholangiocarcinoma

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Tissue samples of human cholangiocarcinomas and corresponding samples of normal liver tissue (n=18) were obtained with Institutional Review Board approval. Liver tissue from euthanized mice was fixed in 4% paraformaldehyde for 48 h, embedded in paraffin, and sectioned into 3.5 μm slices. Human CCA specimens were prepared in a similar manner. Paraformaldehyde-fixed, paraffinembedded liver tissue sections were deparaffinized, hydrated and incubated with primary antibody overnight at 4°C. Antibody sources and dilutions are as follows: pAKT (1:50), YAP (1:25), and phospho-STAT3 (1:200) from Cell Signaling (Danvers, MA); α-smooth muscle actin (1:500), ST2 (1:500), and CK-19 (1:500) from Abcam (Cambridge, MA); PanCK (1:500; Dako, Carpinteria, CA), SOX9 (1:1000; Millipore, Billerica, MA), HepPar1 (1:40; Thermo Fisher Scientific, Waltham, MA). PanCK antibody was used as it only recognizes biliary epithelia in mice liver.19 (link) Bound antibodies were detected with biotin conjugated secondary antibodies and diaminobenzidine (Vector Laboratories, Burlingame, CA) as a substrate and the tissue slices were counterstained with hematoxylin.
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