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4 protocols using pan caspase inhibitor z vad fmk

1

Apoptosis Analysis of Drug-Treated Cells

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Cell apoptosis was analyzed at 48 hours after drug treatment [11 (link)]. Pro-survival protein Bcl-2 was determined by Western blot. A measurement of the extent of apoptosis was carried out using an annexin V detection kit (Invitrogen, ThermoFisher, Waltham, MA, USA) to label cell surface phosphatidylserine of apoptotic cells. Briefly, treated cells were trypsinized and washed twice with phosphate-buffered saline, then suspended in binding buffer (10 mM HEPES, pH 7.4, 140 mM NaCl and 2.5 mM CaCl2). To each 100 μl cell suspension was added 5 μl annexin V conjugated to fluorescein isothiocyanate (FITC), cells were incubated at room temperature for 30 min. Stained cells were analyzed immediately by flow cytometry. To further monitor the status of cell apoptosis, T-DM1 treated cells were live stained with annexin V and propodium iodide (PI) together, co-staining images were taken by inverted fluorescence microscope. Annexin V stained cells with PI positive staining were excluded as necrotic cells, apoptotic cells with only annexin V staining were counted and divided by total cells as the percentage of apoptosis. Pan-caspase inhibitor Z-VAD-FMK (Enzo, Farmingdale, NY, USA) with working concentration 20 μM was introduced together with T-DM1 for rescue experiment, cell viability was determined as described in cell viability assay.
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2

Neuronal Signaling Pathway Assays

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SD are from Avanti Polar Lipids (Alabaster, AL). Antibodies against synaptophysin are from Millipore (Billerica, MA, USA). Antibodies against tyrosine hydroxylase (TH), phospho-AKT1/2/3 (Ser473), total AKT, LC3 and poly (ADP-ribose) polymerase (PARP) are from Cell Signaling Technology (Danvers, MA). Antibodies against GAPDH are from Santa Cruz Biotechnology (Santa Cruz, CA). Antibodies against β-actin and the compound 3-methyladenine (3-MA) are from Sigma-Aldrich (St. Louis, MO). Horseradish peroxidase-anti-rabbit IgG and FITC-anti-mouse IgG secondary antibodies are from Jackson Immuno Research Laboratories (West Grove, PA). DMEM:F12 with high glucose (DMEH-21), FBS, RPMI 1640, insulin and antibiotics are from UCSF Tissue Culture Facility (San Francisco, CA). Pan-caspase inhibitor Z-VAD-FMK is from Enzo Life Sciences (Farmingdale, NY). Bafilomycin A1 is from Cayman Chemical Company (Ann Arbor, MI).
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3

Comprehensive Antibody Profiling Protocol

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Specific antibodies to p53, HSP70, HSP60, HSP90β, β-tubulin, p21, GAPDH, and HSP90β siRNAs were purchased from Santa Cruz (Santa Cruz, CA, USA). Polyclonal antibodies to Bax, Bcl-2, cytochrome c, and β-actin were obtained from Millipore (Temecula, CA, USA). Polyclonal antibodies to caspase-3, -7, -9, PARP, CDK2, -4, -6, cyclin D, cyclin E, N-cadherin, E-cadherin, claudin, AKT, and phospho-AKTSer473 were purchased from Cell Signaling (Beverly, MA, USA). Pan-caspase inhibitor (Z-VAD-FMK) was obtained from Enzo life science (New York, NY, USA).
The overall structure flowchart is shown in Figure 6 as follows:
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4

Cytokine-Induced Apoptosis and Necroptosis

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TNFα and TRAIL cytokines were purchased from Peprotech (Rocky Hill, NJ). Antibodies against cleaved caspase-3, phospho-inhibitor of NFκB (pIκB), p50, p65, Lamin B and FADD were purchased from Cell Signaling Technology, Inc. (Danvers, MA). Pan-caspase inhibitor (Z-VAD-FMK) was purchased from Enzo Life Sciences (New York, NY). Ripa lysis buffer was purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX). Necrostatin-1, PS-1145 and actin antibody were purchased from Sigma Aldrich (St. Louis, MO). SM-164 was purchased from ApexBIO (Houston, TX). Fetal bovine serum (FBS) was purchased from Atlanta Biologicals (Lawrenceville, GA). Dulbecco's modified eagle medium (DMEM) cell culture medium and cell culture supplements were purchased from Invitrogen (Carlsbad, CA).
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