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9 protocols using sigmafast dab with metal enhancer

1

Adipose Tissue Histology Analysis

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Brown adipose tissue and inguinal and epididymal adipose tissues were fixed in 4% formaldehyde overnight at room temperature, embedded in paraffin, and cut into 5-μm section with a microtome. Slides were deparaffinized, rehydrated, and stained with hematoxylin and eosin (Sigma) using a standard protocol. Alternatively, sections were stained with anti-UCP1 (ab23841, Abcam; 1:200) and developed with SIGMAFAST DAB with Metal Enhancer (Sigma). Sections were examined by light microscopy (Motic BA600) and photographed with Moticam Pro 285A. Photomicrographs were scanned with an Abaton Scan 300/Color scanner.
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2

Adipose Tissue Histology and Calorimetry

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Brown adipose tissue and inguinal and epididymal adipose tissues were fixed in 4% formaldehyde overnight at room temperature, embedded in paraffin, and sectioned (5 μm) by microtome. The slides were deparaffinized, rehydrated, and stained with hematoxylin and eosin (Sigma) by a standard protocol. Alternatively, the sections were stained with anti-UCP1 (ab23841, Abcam; 1:200) and developed with SIGMAFAST DAB with Metal Enhancer (Sigma). Sections were examined by light microscopy (Motic BA600) and photographed with Moticam Pro 285A. Photomicrographs were scanned with an Abaton Scan 300/Color scanner.
Indirect Calorimetry and Calculated Energy Expenditure Whole-body oxygen consumption was measured with an open-circuit indirect calorimetry system with automatic temperature and light controls (Comprehensive Lab Animal Monitoring System, Columbus Instruments). Mice had ad libitum access to chow and water in respiration chambers, and data were recorded for 48 h, including 24 h of acclimatization. Energy expenditure was calculated as recommended by the manufacturer.
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3

Visualizing Light-Induced H2O2 Production

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To look at the effects of light-induced production of H2O2, Columbia and any1 plants were grown in the light (164 μmol m−2 s−1) for 8 days, transferred to the dark for 24 h and then exposed to light (164 μmol m−2 s−1) for 30 min, 1 h, or 2 h. Cotyledon and hypocotyl tissue were submerged in a solution of 3,3′-diaminbenzidine (DAB) with a metal enhancer (SIGMAFAST™ DAB with Metal Enhancer, Sigma-Aldrich) or distilled water (control) and left under vacuum (−50 KPa) for 4 h. The tissue was cleared with ethanol by washing the samples with 100% ethanol, incubating them in 85% ethanol + 15% methanol overnight, and rinsing them in 70% ethanol and then distilled water. The samples were mounted in 50% glycerol and sealed. All images were acquired at the same light intensity and microscope settings to permit direct comparisons between treatments. The DAB stain intensity was measured as the average inverse gray value using ImageJ (http://imagej.nih.gov/ij/), which was subtracted from the background and considered as the average inverse gray values of distilled water treated seedlings. The staining intensity was representative of the amount of H2O2 produced during the relative light intensity treatments.
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4

SIRT1 Expression in Decidualized HESC

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Confluent HESC cultures in 4-well chamber slides were decidualized as described above in the presence or absence of 100 µM resveratrol for 4 or 8 days. Following treatment, cells were fixed with 4% buffered paraformaldehyde, endogenous peroxidase activity blocked with 1% H2O2 and probed with anti-SIRT1 antibody at a 1:100 dilution overnight (Abcam, Cambridge, UK). Excess primary antibody was washed with TBS-T and probed with a secondary anti-rabbit antibody at a 1:300 dilution (DAKO, Glostrup, Denmark). The expression of SIRT1 was detected using horseradish peroxidase-conjugated streptavidin, 1:300 (DAKO) and visualized with SIGMAFAST™ DAB with Metal Enhancer (Sigma-Aldrich), in which Cobalt chloride was added to enhance 3,3′-diaminobenzidine reaction. Eosin was used as a cytoplasmic counterstain. Images were taken using Keyence BZ-X700 microscope with 40×, 100×, or 200× magnifications (Keyence, Osaka, Japan).
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5

Immunohistochemical Localization of BETL1 and BETL2

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Seeds kept at −80°C were hand dissected whilst frozen and immediately fixed in 0.1 M phosphate buffer pH 7.2 plus 4% paraformaldehyde, 0.1% glutaraldehyde. Samples were then dehydrated in an ethanol series and embedded in Paraplast (Sigma). Sections 8 μm thick were attached to sylanized glass slides. Slides were deparaffinised with xylene (Dimethyl-benzene) and then rehydrated in an ethanol series. Endogenous peroxidase activity was deactivated by incubation in 0.3% hydrogen peroxide for 20 min. Sections were then blocked with 2% normal donkey serum for 2 h at room temperature (RT) and reacted with antiBETL1 or antiBETL2 antisera, or the corresponding pre-sera at 1:500 dilution. Reacted primary antibodies were detected with biotin-conjugated anti-rabbit goat antibody diluted 1:750 (Sigma) and then with Extravidin-peroxidase (Sigma) solution at 1:800 dilution. Finally, positive reaction was developed using SIGMAFAST™ DAB with Metal Enhancer (Sigma) until a gray-black precipitate was clearly visible on the sera-reacted slides. The sections were stained post-detection with 0.025 % Azure B in phosphate buffer pH4 for 3 min, washed in abundant distilled water, mounted in DEPEX and photographed as described in Muñiz et al. (2006 (link)).
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6

Lectin-based Glycoprotein Analysis in Mouse Serum

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The protein in 3 μl of mouse serum was precipitated with ice-cold 75% acetone, and the pellet was solubilized in 100 μl of Laemmli sample buffer. Five microliters of solubilized sample (equivalent to 0.15 μl of serum) was separated on a 4 to 15% TGX gradient gel (Bio-Rad), transferred to a polyvinylidene difluoride (PVDF) membrane, and then probed with biotinylated lectins (Sambucus nigra [SNA], Phaseolus vulgaris erythroagglutinin [E-PHA], Phaseolus vulgaris agglutinin [L-PHA], and Aleuria aurantia [AAL] lectins [Vector Laboratories, Burlingame, CA]) after blocking with 3% BSA in TBS. Probed membranes were incubated with Vectastain ABC-AP (Vector Laboratories), and bound lectin was detected with BCIP/NBT (Kirkegaard & Perry Laboratories, Inc., Gaithersburg, MD). Alternatively, PVDF membranes were incubated with anti-inter-alpha-trypsin inhibitor heavy chain H4 (ITIH4) antibody (ab180139; Abcam, Cambridge, MA), anti-mouse IgM conjugated to horseradish peroxidase (HRP) (A8786; Sigma), anti-ITIH4 antibody (sc-515353; Santa Cruz), goat anti-rabbit IgG conjugated to AP (Promega, Madison, WI), and rabbit anti-mouse IgG conjugated to AP (Promega, Madison, WI). Incubation with secondary antibodies was followed by detection with SigmaFast DAB with metal enhancer (Sigma, Saint Louis, MO) or incubation with the BCIP/NBT phosphatase substrate as appropriate.
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7

Western Blotting of Induced E. coli Proteins

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About 100 μg of cell extracted proteins from each group (induced and non-induced E. coli) were separated by SDS-PAGE and transferred onto PVDF membrane (Immobilon® 0.45 μM, # IPVH00010, Merck-Millipore, USA) for Western blotting. The PVDF membrane was sandwiched with the SDS-PAGE gel and the transfer of proteins was carried out in presence of 1X blot transfer buffer [25mM Tris buffer, 192 mM Glycine, 10% methanol] at 50 V for an initial 2 h followed by at 30 V overnight. The non-specific protein bands on the membrane were blocked by incubating the membrane overnight at 4 °C in 3 % BSA dissolved in 1X PBS. This was followed by incubation of the membrane with 1:5000 dilutions (1X PBS) of primary antibody (Rabbit anti-PAG) for 1 h at room temperature followed by 3 washing with sufficient quantities of 1X PBS/Tween 20 (PBST). The membrane was then incubated with 1:1000 diluted goat anti-Rabbit-HRP conjugated secondary antibodies (Thermo Fisher Scientific, USA) for 1 h at room temperature. The unused secondary antibody on the membrane was washed with PBST three times and finally, protein bands that reacted to primary as well as secondary antibody were developed using SIGMA FAST™ DAB with Metal Enhancer (D0426, Sigma Chemicals) following manufacturer's protocol.
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8

Protein Expression Visualization Protocol

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The samples have been prepared in the same way as described above for the detection of the TrwB/VirD4 expression. The only difference being that the expressed proteins were visualized by incubating the membrane with anti‐FLAG antibody produced in rabbit (Abcam) followed by incubation with anti‐rabbit antibody conjugated with horseradish peroxidase (Abcam). The bands were visualized by incubating the membrane with SIGMAFAST™ DAB with metal enhancer (Sigma‐Aldrich).
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9

Immunohistochemical Localization of BETL1 and BETL2

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Seeds kept at −80°C were hand dissected whilst frozen and immediately fixed in 0.1 M phosphate buffer pH 7.2 plus 4% paraformaldehyde, 0.1% glutaraldehyde. Samples were then dehydrated in an ethanol series and embedded in Paraplast (Sigma). Sections 8 μm thick were attached to sylanized glass slides. Slides were deparaffinised with xylene (Dimethyl-benzene) and then rehydrated in an ethanol series. Endogenous peroxidase activity was deactivated by incubation in 0.3% hydrogen peroxide for 20 min. Sections were then blocked with 2% normal donkey serum for 2 h at room temperature (RT) and reacted with antiBETL1 or antiBETL2 antisera, or the corresponding pre-sera at 1:500 dilution. Reacted primary antibodies were detected with biotin-conjugated anti-rabbit goat antibody diluted 1:750 (Sigma) and then with Extravidin-peroxidase (Sigma) solution at 1:800 dilution. Finally, positive reaction was developed using SIGMAFAST™ DAB with Metal Enhancer (Sigma) until a gray-black precipitate was clearly visible on the sera-reacted slides. The sections were stained post-detection with 0.025 % Azure B in phosphate buffer pH4 for 3 min, washed in abundant distilled water, mounted in DEPEX and photographed as described in Muñiz et al. (2006 (link)).
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