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8 protocols using ficoll 1

1

Isolation and Culture of Fish Cell Lines

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Rainbow trout RBCs were obtained and purified as previously described [6 (link)]. Briefly, RBCs obtained from the caudal vein were purified by Ficoll density gradient centrifugation (Ficoll 1.007; Sigma-Aldrich, Madrid, Spain). Purified RBCs were cultured in 25 cm2 cell culture flasks (Nunc, Roskilde, Denmark) with RPMI-1640 medium (Dutch modification) (Gibco, Thermo Fischer Scientific, Waltham, MA, USA) supplemented with gamma- irradiated 10% FBS (fetal bovine serum) (Cultek, Madrid, Spain), 1 mM pyruvate (Gibco), 2 mM l-glutamine (Gibco), 50 μg/mL gentamicin (Gibco), 2 μg/mL fungizone (Gibco), 100 U/mL penicillin, and 100 μg/mL streptomycin (Sigma-Aldrich) at 14 °C for 24 h before experimentation.
The fish cell line TPS-2 (rainbow trout stromal pronephros cell line) [17 ], donated by Dr. AJ Villena, was also used in this work. TPS-2 cells were maintained in RPMI medium containing 20% FBS, 1 mM pyruvate, 2 mM l-glutamine, 50 µg/mL gentamicin and 2 µg/mL fungizone at 21 °C.
The EPC (Epithelioma Papulosum Cyprini) cell line [18 (link)] was purchased from the Americal Type Culture Collection (ATCC, CRL-2872). EPC cells were maintained in RPMI medium containing 10% FBS, 1 mM pyruvate, 2 mM l-glutamine, 50 μg/mL gentamicin, and 2 μg/mL fungizone at 28 °C.
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2

Proteomic Analysis of Immunized Peripheral Blood

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Thirty-two individuals (16 for TFP1 injection and 16 for GVHSV injection) were immunized as described above. Peripheral blood was extracted at 14 dpi, and PB-RBCs were purified by 2 density gradient centrifugations (1600 rpm, Ficoll 1.007; Lymphoprep, Reactiva, Sigma-Aldrich) as previously described [9 (link)]. The 99.9% purity of RBCs was estimated by optical microscopy (Supplementary Figure S1). Cells (107 cells per individual) were pelletized by centrifugation (1600 rpm, 5 min), the supernatant was removed, and the cell pellet was washed 3 times with PBS. The pellet was then digested, cleaned-up/desalted, and pooled into 2 pools of 8 individuals for each condition (TFP1 or GVHSV) (Figure 1). Samples were subjected to liquid chromatography and mass spectrometry analysis (LC-MS) as previously described [14 (link),29 (link)].
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3

Isolation and Culture of Rainbow Trout RBCs

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Rainbow trout RBCs were obtained from peripheral blood of fish sacrificed by overexposure to tricaine (tricaine methanesulfonate, Sigma-Aldrich) (0.3 g/L). Peripheral blood was sampled from the caudal vein using insulin syringes (Nipro, Bridgewater, NJ, USA) as previously described (14 (link)). RBCs were purified by two consecutive density gradient centrifugations (7,206 g, Ficoll 1.007; Sigma-Aldrich). Purity of RBCs of 99.9% was estimated by optical microscopy (Figure S1). Purified RBCs were cultured with RPMI-1640 medium (Dutch modification) (Gibco, Thermo Fischer Scientific Inc., Carlsbad, CA) supplemented with 10% fetal bovine serum (FBS) gamma irradiated (Cultek, Madrid, Spain), 1 mM pyruvate (Gibco), 2 mM L-glutamine (Gibco), 50 μg/mL gentamicin (Gibco) and 2 μg/mL fungizone (Gibco), 100 U/mL penicillin and 100 μg/mL streptomycin (Sigma-Aldrich) at a density of 106 cells/mL at 14°C.
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4

Rainbow Trout RBC Isolation and Cell Line Maintenance

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Rainbow trout RBCs were obtained and purified as previously described (4 (link), 7 (link)). Briefly, RBCs extracted from the caudal vein were purified by 2 successive Ficoll density gradient centrifugations (7,206 g, Ficoll 1.007; Sigma-Aldrich, Madrid, Spain). Ficoll-purified RBCs were maintained in 25 cm2 flasks (Nunc Roskilde, Denmark) with RPMI-1640 medium (Dutch modification) (Gibco, Thermo Fisher Scientific, Carlsbad, CA) supplemented with 10% fetal bovine serum (FBS) gamma irradiated (Cultek, Madrid, Spain), 1 mM pyruvate (Gibco), 2 mM L-glutamine (Gibco), 50 μg/mL gentamicin (Gibco), 2 μg/mL fungizone (Gibco), 100 U/mL penicillin (Sigma-Aldrich), and 100 μg/mL streptomycin (Sigma-Aldrich) at 14°C for 24 h prior to experimentation.
The RTG-2 (rainbow trout gonad-2) cell line was purchased from the American Type Culture Collection (ATCC 50643) and maintained at 21°C in MEM medium (Sigma-Aldrich) containing 10% FBS, 1 mM pyruvate, 2 mM L-glutamine, 50 μg/mL gentamicin, and 2 μg/mL fungizone.
VHSV strain 07.71 (20 ) was purchased from the American Type Culture Collection (ATCC VR-1388) and cultured in fathead minnow epithelioma papulosum cyprini (EPC) (21 (link)) cells at 14°C as previously described (22 ).
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5

Rainbow Trout RBC Isolation and Culture

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Rainbow trout RBCs were obtained from the peripheral blood of fish sacrificed by overexposure to 0.3 g/L tricaine. RBCs were purified by 2 consecutive density gradient centrifugations (7206 g, Ficoll 1.007; Sigma-Aldrich). Purified RBCs were cultured in RPMI-1640 medium (Dutch modification) (Gibco, Thermo Fisher Scientific, Inc.) supplemented with 10% fetal bovine serum (FBS) gamma-irradiated (Cultek), 1 mM pyruvate (Gibco), 2 mM l-glutamine (Gibco), 50 μg/mL gentamicin (Gibco), 2 μg/mL fungizone (Gibco), 100 U/mL penicillin (Sigma-Aldrich), and 100 μg/mL streptomycin (Sigma-Aldrich) at a density of 106 cells/mL and kept at 14 °C until use.
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6

Rock Bream Viral Infection Model

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Fish (11.0 ± 0.8 cm, 29.3 ± 4.7 g) were randomly divided into two groups (20 fish per group): a virus-injected group and a PBS-injected group. The experimental group was injected i.p. with RBIV (100 μL/fish) containing 1.1 × 107 MCP gene copies, and the control group was injected i.p. with PBS (100 μL/fish). Each group of fish were maintained at 23°C in the aquarium containing 250 L of UV-treated seawater. Blood (100 μL/fish) was collected from 8 fish at 7 dpi. Then, RBCs were purified by 2 consecutive density gradient centrifugations (7,206 g, Ficoll 1.007, Sigma-Aldrich). All rock bream experiments were carried out in strict accordance with the recommendations of the Institutional Animal Care and Use Committee of Chonnam National University (permit number: CNU IACUC-YS-2015-4).
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7

RBIV Infection Dynamics in Rock Bream

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RBIV-free rock bream individuals were obtained from a local farm. Thirty fish (11.2 ± 1.2 cm, 28.1 ± 3.2 g) were maintained at 23°C in an aquarium containing 250 L of UV-treated seawater. Fish were injected intraperitoneally (i.p.) with RBIV (100 μL/fish, 1.1 × 107 MCP gene copies) or phosphate-buffered saline (PBS) (100 μL/fish) as a control. Blood (200 μL/fish) and organs (spleen, kidney, and liver) were collected from RBIV-infected rock bream individuals at 1, 2, 4, 7, and 10 days post infection (dpi) (4 fish per time point). RBCs were isolated from blood (100 μL/fish) and purified by 2 consecutive density gradient centrifugations (7,206 g, Ficoll 1.007, Sigma-Aldrich). For RBIV copy number analysis, genomic DNA was isolated from the RBCs, blood, spleen, kidney, and liver of each fish using High Pure PCR Template Preparation Kit (Roche) following standard protocol. A standard curve was generated to determine RBIV MCP gene copy number by RT-qPCR as described previously (11 (link)). Virus copy number was determined from 100 μL of total genomic DNA. Statistical analyses were performed using GraphPad Prism software version 5.0 (GraphPad Software, USA). One-way analysis of variance (ANOVA) was performed between conditions, with Tukey's multiple comparison test. P < 0.05 were considered to indicate statistical significance.
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8

Isolation of Rainbow Trout RBCs

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Rainbow trout RBCs were obtained from the peripheral blood of fish which died through overexposure to tricaine (tricaine methanesulfonate, Sigma-Aldrich, Madrid, Spain; 0.2 g/L), as previously described [8 (link)]. Briefly, peripheral blood was sampled from the caudal vein. Then, RBCs were purified by two consecutive density gradient centrifugations (7206 g, Ficoll 1.007; Sigma-Aldrich). Purity of RBCs of 99.9% was estimated by optical microscopy evaluation (Figure S1).
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