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Ripa lysis buffer

Manufactured by Elpis Biotech

RIPA lysis buffer is a commonly used protein extraction and cell lysis solution. It contains a combination of ionic and non-ionic detergents that help to solubilize and extract proteins from cells and tissues.

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8 protocols using ripa lysis buffer

1

Western Blot Analysis of Oxidative Phosphorylation

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Tissues (soleus, EDL, and cardiac muscle) were homogenized in the RIPA lysis buffer (ELPIS Biotech, Korea) and the concentration of proteins was determined by Bradford method. The proteins (30 μg) were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (8% or 12% separating gel), transferred on to polyvinylidene difluoride (PVDF) membranes (Millipore, Boston, MA), and blocked with 5% bovine serum albumin. The membranes were incubated with the primary antibodies overnight at 4 °C. As primary antibodies, we used a total oxidative phosphorylation (OXPHOS) complex cocktail (ab110413, diluted in 1:1000) and uncoupling protein 3 (UCP3; sc-31,385, diluted in 1:1000). The membranes were then washed with washing buffer (phosphate-buffered saline containing 0.1% Tween 20), and then incubated with horseradish peroxidase (HRP)-conjugated secondary antibody (Invitrogen; dilution, 1:5000). The level of protein expression was determined using the Luminate Forte Western HRP Substrate (Millipore, USA). The density of the protein bands developed was monitored using a ChemiDoc XRS system (Bio-Rad, Hercules, CA, USA).
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2

Granzyme B Secretion in Electrical Stimulation

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KHYG-1 cells were seeded in 6-well plates and incubated at 37°C with 5% CO2 for 4 h and 8 h after stimulation for 1 h under each electrical condition (0.5 V/cm, 1.0 V/cm). The culture medium was collected and centrifuged at 600 g for 5 min to obtain supernatant samples. Intracellular proteins were extracted using radioimmunoprecipitation assay (RIPA) lysis buffer (Elpis Biotech, Daejeon, Korea) containing a protease inhibitor cocktail (Thermo Fisher Scientific) according to the manufacturer’s protocol. The granzyme B protein level intracellularly or secreted into the medium was detected using a Human Granzyme B ELISA kit (3486-1H-6; MABTECH, Nacka Strand, Sweden), following the manufacturer’s protocol.
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3

Western Blot Analysis of Skin Barrier Proteins

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The HaCaT cells were lysed in RIPA lysis buffer (Elpis Biotech) with a protease inhibitor cocktail (Sigma-Aldrich). Lysate protein concentrations were determined by the Bradford assay. Western blot analysis was then performed as previously described (20 (link)). The blots were incubated at 4°C with antibodies against PPARα, loricrin, involucrin, transglutaminase, filaggrin, matriptase, prostasin, caspase-14 (1:500 to 1:1,000 dilution; Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), and α-tubulin (1:1,200 dilution; Cell Signaling, Beverly, MA, USA). Bound antibodies were detected with a horse-radish peroxidase-conjugated secondary antibody (1:5,000 dilution; Bethyl Laboratories, Inc., Montgomery, TX, USA). Signals were detected with the enhanced chemiluminescence (ECL) detection system (Amersham BioSciences UK Ltd., Amersham, Buckinghamshire, UK) and visualized with G:BOX EF imaging system (SynGene, Cambridge, UK) and the GeneSnap (SynGene).
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4

Protein Expression Analysis by Western Blot

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A protein extraction RIPA lysis buffer (Elpis Biotech) containing a Halt Protease Inhibitor Cocktail (Thermo Fisher Scientific, Inc.) was used to lyse the treated cells. Thereafter, Protein Assay Dye Reagent Concentrate (Bio-Rad Laboratories, Inc.) was used to quantify the extracted protein. Equal amounts of proteins (50 µg/lane) were separated by 12.5% SDS-PAGE gel and transferred to a PVDF membrane (MilliporeSigma). The membranes were then blocked with 5% skimmed milk in Tris-buffered saline containing 0.05% Tween-20 (TBST) at room temperature for 2 h. The primary antibodies used were anti-Bax (1:500), anti-Bcl-2 (1:500), anti-PARP (1:500), anti-caspase-3 (1:500), anti-caspase-9 (1:500), and β-actin (1:1,000). The membranes were incubated with primary antibodies diluted in TBST overnight at 4˚C, washed three times with TBST. Finally, a western blotting detection kit (ECL Western blotting substrate kit; Abcam) was used to observe the protein bands after treatment with a horseradish peroxidase-linked secondary antibody (1:1,000, Advansta) at room temperature for 1 h.
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5

Western Blot Protein Analysis Protocol

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Cells were incubated in ice-cold RIPA lysis buffer (Elpis Biotech, Daejeon, Republic of Korea) containing protease inhibitor cocktail tablets (Roche Diagnostics, Mannheim, Germany). The lysates were centrifuged at 13,000 rpm for 15 min at 4°C. The supernatants were then collected and frozen at -80°C. Protein concentrations were determined using a BCA protein assay kit (Pierce, Rockford, IL, USA) according to the manufacturer’s instructions. The protein samples were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes (Bio-Rad), which were then probed overnight with primary antibodies. Next, the gels were incubated with horseradish peroxidase-conjugated secondary antibodies for 1 h at room temperature. The intensities of the signals were recorded and quantified using a molecular imaging system (Molecular Imager ChemiDoc XRS+; Bio-Rad).
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6

Immunoblotting Protocol with RIPA Lysis and ECL Detection

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Immunoblotting was performed, as described previously with some modifications [54 (link)]. For the preparation of whole-cell lysates, cells were lysed for 30 min on ice through the addition of RIPA lysis buffer (ELPIS Biotech, EBA1149) plus protease inhibitor cocktail (Sigma, P8340) and phosphatase inhibitor cocktail (Sigma, P0044, P5726). Centrifugation was performed at 12,000 × g for 30 min at 4°C, and the supernatants were collected and used as protein extracts. Protein extracts were added to sample buffer, boiled for 5 min, and stored at – 80°C until use. Samples containing 20–40 µg of protein extract were separated on a polyacrylamide gel and transferred to a PVDF membrane (Bio-rad, 162–0177), which was blocked with 5% nonfat dry milk (Bio-rad, 170–6404) in 0.05% Tween-Tris-buffered saline (T-TBS; 20 mM Tris, 150 mM NaCl, 0.05% Tween 20 (Sigma-Aldrich, P9416), pH 7.5) for 60 min at room temperature (RT). Blots were probed overnight at 4°C with the relevant antibodies, washed, and probed again with species-specific horseradish peroxidase-conjugated secondary antibodies (Santa Cruz Biotechnology, sc-2004, sc-2005, sc-2006). Protein signals were visualized using an enhanced chemiluminescence reagent.
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7

Quantifying GPCR Expression in Endothelial Progenitor Cells

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Western blot analysis was performed to assess the cellular expression levels of ADRB1, ADRB2, AT1R, and β-actin in EPCs. Rabbit polyclonal anti-ADRB1 (1 : 1000, Abcam, UK), rabbit polyclonal anti-ADRB2 (1 : 1000, Abcam), mouse monoclonal anti-AT1R (1 : 1000, Abcam), and mouse monoclonal anti-β-actin (1 : 5000, Santa Cruz Biotechnology, USA) were used. EPCs were first treated with Ang II or TERT, following which the total cellular proteins were extracted using RIPA lysis buffer (ELPIS BIOTECH, Korea). The proteins (15–20 μg) were then separated by SDS-PAGE and transferred to polyvinylidene fluoride membranes (Millipore, USA). The membranes were blocked with 5% skim milk for 1 h at 25°C and incubated overnight with the specific primary antibodies mentioned above, at 4°C. For the immunoprecipitation assay, cell lysates (1 mg) were incubated with anti-AT1R antibody (Abcam) and then with Protein A/G PLUS-Agarose beads (Santa Cruz Biotechnology). The eluents (25 μl) were separated by SDS-PAGE and detected with ADRB2 antibody (Abcam). Quantitative analysis of the band was performed using ImageJ software, and the Western blot result for each studied protein was normalized with that for β-actin.
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8

Protein Isolation and Immunodetection Protocol

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Protein isolation with RIPA lysis buffer was purchased from Elpis biotech (#EBA-1149, Deajeon, Korea) and Pierce™ BCA Protein Assay Kit was purchased from Thermo (#23227, MA, USA). Anti-GFAP, rabbit polyclonal antibody was purchased from DAKO (#Z0334, CA, USA). Anti-NeuN rabbit monoclonal antibody was purchased from Millipore (#3838, MA, USA). Anti-PSD-95, mouse monoclonal antibody, anti-rabbit, goat polyclonal tagged Alexa Fluor 488, anti-mouse, goat polyclonal tagged Alexa Fluor 555 and 4'. 6-diamidino-2phenylinodole (DAPI) were purchased from ThermoFisher (#MA1-046, #A11034, #A11012, #A21426 and #D3571, MA, USA). Anti-GAPDH, rabbit polyclonal antibody was purchased from AbFrontier (#LF-PA0018, Seoul, Korea). Rabbit polyclonal antibody was purchased from WAKO (#016-20001, Osaka, Japan). Antimouse, sheep polyclonal horseradish peroxidase (HRP) tagged antibody was purchased from Abcam (#ab26116, #ab26113 and #ab6808, EA, UK). Anti-p-STAT3 (Tyr 705), STAT3, p-p44/42, p44/42 rabbit polyclonal antibody was purchased from Cell signaling (#9145, #12640, #4377 and #4695 MA, USA). Anti-NF-κB mouse monoclonal were purchased from Santa Cruz (#sc-7151, Taxas, USA)
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