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18 protocols using sca 1 pe cy7

1

Multicolor Flow Cytometry of Bone Marrow

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For analysis by flow cytometry red blood cell depleted bone marrow cells were stained with one of more of the following: biotin CD3, biotin CD45R/B220 (RA3-6B2), biotin CD11b (M1/70), biotin erythroid marker (TER-119), biotin Ly-6G (RB6-8C5), c-kit APC, sca-1 PE-Cy7 and either CD34 PE or CD49b PE (all eBioscience) in the dark. Bone marrow was washed once and incubated with streptavidin PE-Cy5 for 20 min in the dark. Bone marrow was washed twice and analysed using flow cytometry on a Becton Dickinson LSR II. All samples analysed were gated based on FSC/SSC and GFP+ cells.
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2

Multiparameter Flow Cytometry Analysis of Hematopoietic Reconstitution

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Gating strategies can be found in Supplemental Information (Figures S7 and S8). For analysis of mixed chimerism, cells were first stained with LIVE/DEAD Fixable Near-IR Dead Cell Stain Kit (ThermoFisher Scientific) and blocked with TruStain FcX anti-mouse (Biolegend) for 10 min on ice in Cell Stain Buffer (Biolegend). Antibodies used for staining from Biolegend were as follows: CD45.1 PerCp-Cy5.5 (A20), CD45.2 Pacific Blue (104), CD3 AF488 (17A2), CD4 PE (RM4–4), CD11b BV605 (M1/70), CD19 PE-Cy7 (6D5), CD49b APC (DX5), CD25 PE-Cy5 (PC61), CD8a PE (53–6.7), Ter-119 PE, CD11b PE (M1/70), Gr-1 PE (RB6–8C5), CD3 PE (17A2), B220 PE (RA3–6B2), CD317 PE (927), CD172a APC (P84), CD11c AF700 (N418), CD304 PE (3E12), FOXP3 AF647 (150D), Helios AF488 (22F6), B220 FITC (RA3–6B2), CD8a BV510 (53–6.7). eBioscience antibodies used were as follows: CD117 APC (2B8), Sca-1 Pe-Cy7 (D7). Staining of intracellular markers was conducted with Biolegend True-Nuclear Transcription Factor Buffer Set as per manufacturer’s instructions. For live cell sorting, propidium iodide (MilliporeSigma) was used to determine viability. Cells were analyzed and/or sorted with a BD FACSAria II. Data were analyzed using FlowJo (10.7).
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3

Hematopoietic Subpopulation Sorting

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Sorting of Lin-/kit+ hematopoietic subpopulations was conducted on a FACS Aria (BD Biosciences) and analyzed using FlowJo software (Flow Jo). Antibodies used to separate HSPC populations were as follows: streptavidin-PerCP-Cy5.5, c-kit-APC, FLT3-PE, and FcRγ-PE from BD Bioscience (San Jose, CA), and sca-1-PE-Cy7 and CD34-FITC from ebioscience (San Diego, CA).
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4

Lineage Cocktail for Mouse Hematopoietic Stem Cell Analysis

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Lineage cocktail- Biotin (Miltenyibiotec), c-Kit APC-eFluor780 (eBioscience), Sca-1 PE-Cy7 (eBioscience), Flt3 – APC (eBioscience), CD34 -eFluor450 (eBioscience), c-Kit–PE (Biolegend), strepavidin-percp/cy5.5 (eBioscience). The stem cell compartments were defined as following: LT-HSC, LincKit+Sca1+CD34FLT3; ST-HSC, LincKit+Sca1+CD34+FLT3; and MPP, LincKit+Sca1+ CD34+FLT3+.
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5

Isolation and Purification of Murine LSK Cells

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Lin bone marrow cells were isolated from GFP+ or wild-type C57B/6J mice using a Lineage cell depletion kit (Miltenyi). LinSca-1+c-Kit+ (LSK) cells were subsequently purified by FACS sorting on BD AriaIII SORP using PE conjugated antibodies against Lineage+ markers (CD3e (clone:145-2C11); CD4 (clone: RM4-5); CD8 (clone: 53-6.7); B220 (clone: RA3-6B2); Ter119 (clone: TER-119); Gr1 (clone: RB6-8C5); Mac1 (clone: M1/70)), Sca1 PE-Cy7 (clone: D7), c-Kit APC-Cy7 (clone: 2B8) (all from eBiosciences).
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6

Immunophenotyping of Mouse Bone Marrow

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Bone-marrow cells were flushed from the long bones (tibias and femurs) and stained in PBS (Corning Cellgro) supplemented with 2% of inactivated fetal bovine serum (Gemini BioProducts) with the following antibodies from BD Biosciences: B220 FITC, CD11b FITC, PE, APC or APCcy7, CD11CFITC, PE, APC or APC-cy7, CD4FITC, PE or APC, CD8 FITC, PE or APC, NK1.1 FITC, Ter119 FITC, CD3 FITC (when gates on lineage negative bone-marrow cells were used, FITC-conjugated antibodies were used), c-Kit PE or APC, Flk2 PE, CD45.2 biotin or FITC, CD45.1 APC, IL7R Alexa 647, CD34 APC, CD150 PE. From eBiosciences: Sca-1 PEcy7, AA4.1 bio or PEcy-7, streptavidin APC. From Invitrogen: streptavidin Pacific blue. DAPI was used to exclude dead cells. Flow cytometry was performed on a fluorescence-activated cell sorting (FACS) Calibur, LSRII or LSR Fortessa (BD Biosciences).
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7

Quantification of Progenitor Cells

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Progenitors in the peripheral blood were identified and quantified using a protocol adapted from Serwold et al. 40 (link). Peripheral blood from six animals per group was collected in EDTA by terminal cardiac bleed and pooled. Blood was diluted 1:1 in RPMI and mononuclear cells enriched by centrifuging through a layer of Lympholyte-Mammal (Cedarlane Laboratories, Burlington, USA). Cells were collected, washed, and stained for Lin markers (hematopoietic lineage eFluor450 cocktail (EBioscience) and NK1.1, CD11b, and CD19 on FITC), CD27-PerCP-eFluor710, CD127-Alexa Fluor 647, Sca-1-Pe-Cy7, CD117-allophycocyanin-eFluor780, and Flt3-PE (all eBioscience). At least 5 × 106 events were analyzed by flow cytometry per sample.
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8

Multiplex Flow Cytometry Analysis of Fetal Liver Cells

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The following antibodies were obtained from BD Biosciences (San Diego, CA, USA): anti-CD3-APC (145-2C11), anti-cKit-Pe-Cy7 (2B8), and anti CD11b-PE (M1/70). For Lineage depletion these markers were used: CD3 (145-2C11), CD4 (L3T4), CD8 (53-6.7), CD11b (M1/70), Gr1 (RB6-8C5), B220 (Ra3-6B2), Ter119 (Ly76) and Nk1.1 (PK136) biotin and subsequently were stained with streptavidin eFluor 450 (48-4317) from eBioscience (Vienna, Austria). The following antibodies were also purchased from eBioscience: Ly5.1-PE-Cy7 (A20), Ly5.2 Alexa Fluor 780 (104), B220 PE-Cy7 (RA3-6B2), Gr1 eFluor 450 (RB6-8C5) and Sca1 PE-Cy7 (D7). Cells were stained in fluorescence activated cell sorter (FACS) buffer (PBS, 2% bovine serum albumin, 0.1% sodium azide) for 30 min at 4 °C. Ultimately, cells were washed and measured either on a Canto I, or an Aria (BD Biosciences) FACS. For FL LSK, Mac1 was precluded from the lineage gate, as FL LSK express Mac1.45 (link) For apoptosis analysis, E14 FL cells were stained with 7AAD/AnnexinV kit (BD Bioscience) in combination with LSK staining. For proliferation analysis E14 FL cells were stained with PE mouse anti-Ki67 set (BD Pharmingen, San Diego, CA, USA) in combination with LSK staining or for cell cycle analysis with an adapted protocol for combined LSK and propidium iodide staining.46 (link) Data were analyzed using FlowJo software (Tree Star, Ashland, OR, USA).
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9

Isolation of Anagen and Telogen Hair Follicle Cells

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For isolation of anagen cells, skins were first incubated in 0.25% collagenase (Sigma) in HBSS (GIBCO) at 37°C for 1–2 hr to digest the dermis. Next, the digested tissues were centrifuged and resuspended in 0.25% Trypsin (GIBCO) and incubated at 37°C for 20 min with gentle shaking. Single-cell suspensions were obtained by pipetting gently and filtering through 70 μm strainers, followed by 40 μm strainers. Staining buffer (PBS with 5% FBS treated with Bio-Rad Chelex to remove calcium) was added to inactivate Trypsin, and cells were collected by centrifugation for 5 min at 300 × g. Cell suspensions were incubated with the appropriate antibodies diluted in staining buffer for 15 min at 4°C. For the isolation of telogen cells, subcutaneous fat was removed from skins with a scalpel. Skins were placed on 0.25% Trypsin at 37°C for 30 min with the dermis side facing down. Skins were then gently scalped from the epidermis to isolate epidermal cells and filtered, centrifuged, and stained as above. The following antibodies were used: CD34–Alexa 660 (eBioscience), α6–phycoerythrin (eBioscience), Sca1–PE-Cy7 (eBioscience), and c-Kit-APC (eBioscience).
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10

Sorting Activated and Inactive Skin Hair Germ Stem Cells

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The dorsal skin of seven-week-old female mice were used for the sorting of inactive ShgSCs. For the sorting of activated ShgSCs, dorsal hairs of seven-week-old female mice were plucked to activate ShgSCs 2 days before skin specimen collection (28 (link)). The dorsal skin of 32-day-old mice were irradiated with 5.5Gy of IR and skin specimen was collected at 72hr. Cell preparation for FACS was performed as described (29 (link)). The following antibodies were used: CD34-FITC (eBioscience, 11-0341, 1:50), Sca1-PE-Cy7 (eBioscience, 25-5981, 1:50) and p-cadherin-PE (R&D systems, FAB761P, 1:100). FACSAria III sorter equipped with Diva software (BD, Bioscience, San Jose, CA) was used for sorting. Total RNA from sorted cells was extracted using MessageBOOSTER™ cDNA Synthesis from Cell Lysates Kit (Epicentre).
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