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25 protocols using fetal bovine serum (fbs)

1

Cell Line Procurement and Characterization

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Cell lines used in this study LNCaP, PC3, RWPE-1 and HEK293T were procured from ATCC (Rockville, MD) between 2004 and 2017. C4-2B cells were generated by Dr. Chung [32 (link)]. These cells were routinely tested for mycoplasma. the latest mycoplasma test, performed on 1/31/2018 using abm-Mycoplasma PCR Detection Kit (Applied Biological Materials Inc. Richmond, BC) as per manufacturer recommendations, was negative. The cell lines were not independently authenticated. L-glutamine, penicillin-streptomycin and sodium pyruvate were purchased from Hyclone/Caisson. Media components and Fetal Bovine Serum (FBS) were procured from Caisson and Atlanta Biologicals respectively and all other chemicals were procured from Corning. Keratinocyte-Serum Free Medium (K-SFM), bovine pituitary extract (BPE) and epidermal growth factor (EGF) were obtained from GIBCO (Germantown, MD). Crystal violet was obtained from Sigma-Aldrich (St. Louis, MO), TET (3B2-0454) and TRAIL (CYT-443) were obtained from 3B Scientific Corporation (Libertyville, IL) and ProSpec-Tany Technogene Ltd. (East Brunswick, NJ) respectively. TRAIL was dissolved in distilled water and kept at −20°C until further use. All other chemicals were purchased from Sigma.
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2

Culturing A549 and HUVEC Cells

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Human lung adenocarcinoma human alveolar basal epithelial cells (A549 cells) were obtained from ATCC (Manassas, VA) and cultured in phenol-red free DMEM-F12K Media (Caisson Laboratories, Smithfield, UT) supplemented with 10% (v/v) FBS. These A549 cells were fed every 3 days with fresh media and sub-cultured in T-75 flasks at 4,000 cells/cm2. Cells were detached by addition of 3 mL of Trypsin-EDTA 1× solution (Caisson Laboratories) for 5 min, then neutralized with 8 mL of fresh media. A549 cells were counted using a Cell Countess instrument (ThermoFisher, Boston, MA) according to the manufacturer’s protocol. Only passages 1–8 were used in experiments. Human umbilical vein endothelial cells (HUVECs) were obtained from ATCC (Manassas, VA) and cultured in F-12K Medium (Gibco, Carlsbad, CA) supplemented with 0.03 mg/ml endothelial cell growth (Sigma-Aldrich, St. Louis, MO), 10% fetal bovine serum (FBS) (Caisson Laboratories), 0.1 mg/ml heparin (Sigma-Aldrich) and 100 U/ml streptomycin-penicillin solution (Gibco). Cell growth, sub-culturing and counting were performed in the same manner as for A549 cells.
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3

Endothelial Cell Line BSO Treatments

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Endothelial cell lines (mouse aortic endothelial cells; MAECs and mouse vena cava endothelial cells; VCECs) were cultured in Dulbecco’s modified Eagle Media-DMEM (Caisson labs, UT) with 10% Fetal bovine serum-FBS (Caisson labs, UT), added L-glutamine (Genesee Scientific, CA), penicillin and streptomycin (Genesee Scientific, CA) at 37oC in 5% CO2. Cells were grown to confluence followed by BSO (Sigma, MO) treatments of increasing concentrations (0, 5, 25, 50, 75, and 100 μM) for 19hrs in starvation media (with 0.5% FBS).
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4

Macrophage Generation from Monocytes

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Macrophages were generated from monocytes as previously described (Croft et al., 2018 (link)). Briefly, peripheral blood was obtained from healthy donors, which was then layered on top of an equal volume of a 1-step polymorphic dextran gradient (Accurate Chemical). The samples were spun at 730 RCF for 35 min at room temperature, and the mononuclear cells (monocytes) were isolated from the uppermost band. Macrophages were generated from blood monocytes in six-well culture plates in culture medium (Roswell Park Memorial Institute (RPMI)) 1640 medium [Corning] containing 10% Fetal Bovine Serum (FBS) (Caisson Labs), 100 IU/ml penicillin, 100 μg/ml streptomycin, and 0.25 μg/ml amphotericin) for 6 days supplemented with 50 ng/ml CSF1 or 50 ng/ml IL-34 (GenScript; Foucher et al., 2013 (link)). In all experiments, the two types of macrophages (IL-34- or CSF1-derived) were generated in parallel from monocytes of the same donor, although different donors were used for different replicates.
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5

Expansion and Maintenance of Breast Cancer Cell Lines

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The MCF-7, HCC1937, MDA-MB-231, MDA-MB-468, MDA-MB-453, and SK-BR-3 cell lines were acquired from American Type Culture Collection (Virginia, USA). The MDA-MB-468 with STAT3 overexpression cell line was generously provided by Dr. Liu CY, working in Division of Hematology and Oncology, Department of Medicine, Taipei Veterans General Hospital (Taipei, Taiwan). All cell lines were immediately expanded and frozen down immediately after acquiring. All cell lines could be restarted every 3 months from a frozen vial of the same batch of cells. Cells except for MDA-MB-468 with STAT3 overexpression were maintained as described culture medium by ATCC; MDA-MB-468 with STAT3 overexpression cells was maintained in L-15 medium with G418 700 μg/mL. All media were supplemented with 10% FBS (Caisson, USA), 100 units/mL penicillin, 100 mg/mL streptomycin, and 25 mg/mL amphotericin B (Caisson, USA). All human breast cancer cell lines were incubated in a humidified incubator at 37°C in an atmosphere of 5% CO2 in air.
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6

Culturing Rat Neuroblastoma-Glioma Cells

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NG108 rat neuroblastoma-glioma hybrid cells (ATCC HB-12317) cells were cultured at 37 °C with 5% CO2 in air in Dulbecco's Modified Eagle's medium (Caisson Labs, North Logan, UT) without sodium pyruvate, supplemented with 4 mM L-glutamine, 4.5 g/L glucose, 10% FBS, 0.2 mM hypoxanthine, 400 nM aminopterin, and 0.016 mM thymidine (without antibiotics). Media supplements were from Sigma-Aldrich (St. Louis, MO) except for the FBS (Atlanta Biologicals, Norcross, GA). For the passage immediately preceding experiments, cells were transferred onto glass coverslips. Primary rat hippocampus neurons were obtained from Life Technologies (Carlsbad, CA) and seeded on poly-D-lysine/laminin coated coverslips (BD Bioscience, Bedford, MA). The neurons were grown at 37 °C with 5% CO2 in air in the supplier-recommended medium (Neurobasal medium supplemented with 200 mM GlutaMAX I and 2% of B27, all from Life Technologies).
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7

Investigating KMO's Role in Canine CMT Cell Growth

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Canine CMT cell lines CMT-1 and MPG were kindly provided by Dr. Lin CT of the School of Veterinary Medicine, National Taiwan University (Taipei, Taiwan). Both were cultured in Dulbecco's modified Eagle's Medium (DMEM, Gibco) supplemented with 10% fetal bovine serum (FBS, Caisson) and 1% penicillin/streptomycin (Caisson) at 37°C in a humidified atmosphere of 5% CO2. To verify the role of KMO in cell growth, 3000 cells/well of CMT-1 or MPG cells were seeded in a 96-well plate and treated with KMO inhibitor, Ro 61-8048 (Sigma-Aldrich), at the indicated concentrations for 24, 48, and 72 h. After the treatment, quantification of cell proliferation was performed using WST-1 reagent according to the manufacturer's protocol (Roche). For KMO knockdown, small interfering RNAs (siRNAs), including control and KMO, were used, and the reagents were all purchased from Santa Cruz Biotech Inc. CMT-1 and MPG cells were transfected for 48 h with siRNAs against KMO (Forward 5′-CCAAGGUAUUCCCAUGAGATT-3′, reverse 5′-UCUCAUGGGAAUACCUUGGTT-3′; scramble siRNA duplex: forward: 5′-UUCUC CGAACGUGUCACGUTT-3′; reverse: 5′-ACGUGACACGUUCGGAGAATT-3′). The cell viability of the cells was quantified using WST-1 and cell extracts were analyzed by KMO immunoblotting.
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8

Inducing Spz Motility: Formulation Screening

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To investigate which components are needed to induce motility of spz, the mosquitoes were dissected and the obtained salivary glands were crushed in eleven different formulations: (1) Phosphate buffered saline which contains potassium, sodium, chloride and phosphate (PBS; Life Technologies Inc.), (2) Hanks’ balanced salt solution which contains besides the salts present in PBS also glucose, calcium, magnesium, sulphate and bicarbonate (HBSS; Life Technologies Inc.), (3) Roswell Park Memorial Institute medium (RPMI; Life Technologies Inc.) which contains besides the components of HBSS also amino acids and vitamins, (4) PBS enriched with 3.5 mg/ml bovine serum albumin (BSA; Sigma-Aldrich), (5) HBSS + 3.5 mg/ml BSA, (6) RPMI + 3.5 mg/ml BSA, (7) PBS enriched with 10% fetal bovine serum (FBS; Life Technologies Inc.), (8) HBSS + 10% FBS, (9) RPMI + 10% FBS, (10) RPMI without amino acids (Caisson Labs) + 3.5 mg/ml BSA and (11) RPMI without glucose (Life Technologies Inc.) + 3 mg/ml BSA. All eleven formulations had a physiological pH of 7.0–7.5 and a viscosity of < 1.1 cP. For imaging of the spz, 10 µl of the spz solution was pipetted on the cover slip of a confocal dish without any precoating (ø14 mm; MatTek Corporation), covered with another cover slip (ø12 mm; VWR Avantor) and imaged within 45 min. The set-up is schematically depicted in Additional file 1: Fig. S1.
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9

Recombinant Spider Silk Enhances Neural Stem Cell Proliferation

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Mouse neural stem cells (NSCs) were used for the cell culture test. NSCs derived from the brains of adult mice were cultured in Ham’s F-12 and HG-DMEM (1:1), with 10% fetal bovine serum (FBS; Caisson), 1% penicillin-streptomycin-amphotericin (PSA; Caisson), and 400 mg/mL G418 (Invitrogen), in a humid incubator containing 5% CO2 at 37 °C. The culture medium was refreshed every day. The recombinant spider silk-coated surface (area of 1.9 cm2), in a 24-well plate, was immersed in 75% ethanol for 1 h and irradiated with UV light for 1 h before NSC inoculation (cell density 4 × 104 cells/cm2). The proliferation of cells on the surface was evaluated by the Cell Counting Kit-8 (CCK-8; Sigma-Aldrich) assay [27 (link)]. The reacted CCK-8 solution was mixed gently to ensure uniformity and then collected into a 96-well plate. The absorbance, at a wavelength of 450 nm, was detected by a plate reader (SpectraMax M5, Molecular Devices, San Jose, CA, USA). Statistical differences between the experimental groups were performed with the student’s t-test. The result was considered statistically significant when the p-value was smaller than 0.05.
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10

Murine 3T3-L1, RAW264.7 and 4T1 Cell Culture

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Mouse 3T3-L1 fibroblast and RAW264.7 macrophage were kindly provided by Dr. Lin of the National Taiwan University and Dr. Tsai of the National Taiwan Normal University (Taipei, Taiwan), respectively. The original cell lines were purchased from Bioresource Collection and Research Center, Food Industry Research and Development Institute (Hsinchu, Taiwan). Mouse 3T3-L1 and RAW264.7 cells were cultured in Dulbecco's modified Eagle's medium (DMEM, Caisson, Smithfield, UT, USA) containing 10% heat-inactivated calf serum (BS, Gibco, Grand Island, NY, USA) and fetal bovine serum (FBS, Genedirex, Las Vegas, NV, USA), respectively. Murine 4T1 breast cancer cells were purchased from American Type Culture Collection (ATCC, Manassas, VA, USA) and maintained in DMEM containing 10% heat-inactivated FBS with 1% penicillin/streptomycin/amphotericin B (Caisson) at 37°C in an incubator containing a humidified atmosphere of 5% CO2. Aspirin was purchased from Sigma (St. Louis, MO, USA), dissolved in dimethyl sulfoxide (DMSO, Sigma) as a stock solution, and then stored at −20°C. The concentration of DMSO in the vehicle group was equal to the 0.25% DMSO in the highest (5 mM) dose of Aspirin.
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