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2 protocols using cleaved caspase 3 no 9661

1

Fludarabine-Induced Protein Signaling in TSC2-null Cells

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Protein lysis of TSC2-null 621-101 cells treated with Fludarabine was done using mammalian protein extraction reagent buffer (Thermo Fisher Scientific, no. 78501) containing protease and phosphatase inhibitors. Lysates were resolved on 4 to 20% Mini-PROTEAN TGX Precast gels (Bio-Rad, no. 4561094) and transferred using a wet electrophoretic transfer unit (Bio-Rad) onto polyvinylidene difluoride membranes (Thermo Fisher Scientific). After 1 hour of blocking with 5% nonfat dry milk, membranes were incubated with primary antibodies at 4°C overnight. Primary antibodies include: phospho-STAT1 (no. 8826), STAT1 (no. 14994), phospho-STAT3 (no. 9145), STAT3 (no. 30835), PBX1 (no. 4342), cleaved caspase-3 (no. 9661), PARP (no. 9532), cyclin D1 (no. 55506), phospho-RIPK1 (no. 44590), and β-actin (no. 3700) from Cell Signaling Technology. Secondary antibody incubation was done using horseradish peroxidase–linked antibodies for 2 hours. Signal was detected with SuperSignal West Pico PLUS Chemiluminescent Substrate (Thermo Fisher Scientific, no. PI34580).
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2

Antibody Validation for Cell Death Pathways

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The following antibodies were purchased from Santa Cruz Biotechnology, Dallas, TX, USA: cleaved caspase-8 (sc-1226), RIP3 (sc-47368), ACTB (sc-1616) and α-tubulin (TUBA; sc-31779). Cleaved caspase-3 (no. 9661) and RIP1 (no. 3493) were purchased from Cell Signaling Technology, Danvers, MA, USA. Antibodies specific to PLAP (ab118856), RIP3 (ab56164), total MLKL (ab194699), phospho-MLKL (ab187091 and its competing peptide ab206929), cytokeratin-7 (ab9021), and E-cadherin (ab1416) were purchased from Abcam, Cambridge, UK. GCM1 antibody (P100836_P050) was purchased from Aviva Systems Biology, Corp., San Diego, CA, USA. Secondary antibodies include horseradish peroxidase-conjugated donkey anti-goat, goat anti-rabbit and goat anti-mouse from Santa Cruz Biotechnology. For immunofluorescence, the following secondary antibodies were used: Alexa Fluor 594 donkey anti-rabbit and Alexa Fluor 488 donkey anti-rabbit from Life Technologies, Carlsbad, CA, USA.
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