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Fluorometric tunel kit

Manufactured by Promega
Sourced in United States, Australia

The Fluorometric TUNEL kit is a laboratory reagent used to detect DNA fragmentation, a hallmark of apoptosis or programmed cell death. The kit utilizes terminal deoxynucleotidyl transferase (TdT) to incorporate fluorescently-labeled nucleotides into the free 3'-hydroxyl ends of fragmented DNA, allowing for the visualization and quantification of apoptotic cells.

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8 protocols using fluorometric tunel kit

1

Quantifying Apoptosis in Growth Plate

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TUNEL assay was performed on tibial growth plate sections of three-week old mice using a fluorometric TUNEL kit (Promega, G3250) according to manufacturer's protocol as describe previously [49 ].The slides were mounted with Vectashield with DAPI (Vector Laboratories, H1200) and imaged using the CoolSNAP ES Olympus BX51 camera and associated Metaview software. In order to obtain a reliable estimate of number of apoptotic hypertrophic cells in the growth plate, the green fluorescent apoptotic cells within the HZ were counted in three slides, at least 50 μm apart, per mouse and five animals for each genotype. The total number of hypertrophic chondrocytes within the HZ was defined by the number of DAPI-stained nuclei (as determined using ImageJ software). The apoptosis rate was defined as a percentage of the total number of hypertrophic cells within HZ. All data were analysed by one-way ANOVA for statistical significance.
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2

Quantifying Cellular Responses to Radiation

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Apoptotic cells were stained using a commercially available Fluorometric TUNEL kit (Promega, #G3250) per the provided protocol. Immunofluorescence staining was performed on xenograft tumor specimens collected at the end of each study and immunocytochemistry was conducted for cellular kinetics. Primary antibodies used are detailed in Supplementary Table 1. Samples were counterstained with DAPI and Alexa Fluor-conjugated secondary antibodies (ThermoFisher) were used for detection. For xenograft or primary HNSCCs, 3–5 immunofluorescence regions were averaged for quantification of TUNEL+, pH2AX+, or Ki67+ cells per specimen; 3–7 tumors per group were used for analyses. For pH2AX immunocytochemistry, plates were fixed at 0, 1, 8, 24, and 48 hours post-radiation using 10% neutral-buffered formalin. For Ki67 staining, plates were fixed at 0 and 48 hr. Plates were stored in PBS with 0.02% NaN3 at 4°C until all time points were collected and molecularly labeled as described above. Stained 96 well plates were imaged using an Opera Phenix Imaging System with Harmony software (High-throughput Screening Core, University of Colorado) to determine the number of pH2AX foci per nucleus or the number of Ki67-positive cells over time.
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3

TUNEL Assay for Detecting DNA Fragmentation

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The transferase dUTP nick end labeling (TUNEL) assay is a common method for detecting DNA fragments. The TUNEL assay was conducted using a commercial fluorometric TUNEL kit (Promega Co., Madison, WI, USA). The A549 cells were plated on a 24-well glass slide and incubated for 24 h in media containing 5% CSE in the absence or presence of 10–100 μg/mL YE. Cells fixed with ice-cold 4% formaldehyde for 20 min were permeabilized with 0.2% Triton X-100, and fragmented DNA was labeled with fluorescein-dUTP at 37 °C for 1 h. DAPI was used for counterstaining nuclei, and cells were visualized with an Axiomager optical microscope system.
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4

Cell Cycle Analysis and Apoptosis Quantification

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Cells were plated at a density of 50,000 per well in 24-well plate and cultured overnight. The following day, the cells were deprived of FBS overnight to standardize the cell cycle followed by fresh DMEM containing 10% FBS and the indicated concentration of glucose. At the specified times, cells were harvested using 0.5% trypsin (Invitrogen) and washed with wash buffer (0.1% FBS in PBS) twice to remove trypsin. Cells were fixed in ice-cold 70% ethanol for 45 min at 4 °C. Ethanol was removed by washing twice with PBS, and the cells were incubated with propidium iodide (PI) (40 μg/ml) and RNase (10 μg/ml) for 30 min at 37 °C. Samples were analyzed using Beckman Coulter FC500 Flow Cytometry Analyzer. Cell apoptosis was analyzed using flow cytometry (BD LSR II, San Jose, CA, USA) with annexin-V and propidium iodide staining and Fluorometric TUNEL kit purchased from Promega.
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5

TUNEL Assay for Apoptosis Detection

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Cells containing fragmented DNA were evaluated in paraffin sections using a fluorometric TUNEL kit (Promega, Madison, WI, USA, G3250) according to the manufacturer's protocol. Briefly, the sections were dewaxed in xylene and rehydrated through a decreasing series of ethanol concentrations in water. The sections were immersed in 0.85% NaCl for 5 min, washed in PBS, fixed in 4% paraformaldehyde in PBS for 15 min and washed twice in PBS. To permeabilize the sections and allow antigen unmasking, the slides were treated with hot (>85 °C) citrate buffer for 10 min and then cooled for 20 min before being washed with PBS. The sections were incubated with 100 μl of equilibration buffer for 10 min and then labeled with 50 μl of TUNEL reaction mix for 1 h at 37 °C. The reactions were stopped by a 15-min wash in × 2 saline-sodium citrate buffer. The sections were washed in PBS to remove excess label and then dyed with 5 μg ml−1 Hoechst 33342 (BD Biosciences) for 30 min at room temperature. After washing in PBS, the slides were mounted with Vectashield, and the images were collected using a CoolSNAP ES Olympus BX51 camera with the associated Metaview Software (Tokyo, Japan).
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6

TUNEL Assay for Cell Death Analysis

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Cell necrosis and apoptosis in myocardial tissue sections were detected using a TUNEL fluorometric kit (Promega, NSW, Australia). The slides were deparaffinized in xylene and rehydrated through a series of graded alcohols, fixed in paraformaldehyde in PBS (4% v/v), washed in PBS and permeabilized in 20 µg/mL proteinase K (22°C; 10 minutes). Subsequent to further fixation in paraformaldehyde (4% v/v), the slides were incubated with equilibration buffer (22°C; 10 minutes) then with rTdT incubation buffer [90% Equilibration Buffer, 10% Nucleotide Mix, 2% rTdT Enzyme (37°C; 1hour)]. Reaction was stopped by immersion in 2xSSC, and nuclei were counterstained by 1:600 Spectral DAPI (PerkinElmer, USA) in TBST. ZEISS AXIO SCOPE upright fluorescent microscope (Zeiss, NSW, Australia) was used for imaging. The TUNEL+ density was calculated by the measured intensity of fluorescence normalized against the section area on MetaMorph® image analysis software (version 7.6; Molecular Devices, San Jose, CA, USA).
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7

TUNEL Fluorometric Assay for Cardiomyocyte Viability

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Cell viability in tissue sections was detected using a TUNEL fluorometric kit (Promega, NSW, Australia) according to the protocol supplied by the manufacturer. The slides were deparaffinised in xylene then rehydrated by immersion through a series of graded alcohols, washed in 0.85% v/v NaCl then PBS, fixed in 4% v/v paraformaldehyde in PBS, washed in PBS, and permeabilised in 20 μg/mL proteinase K (22 °C; 10 min).
Next, the slides were washed in PBS then fixed in 4% v/v paraformaldehyde, washed in PBS, and incubated with equilibration buffer (22 °C; 10 min) then with rTdT incubation buffer [90% Equilibration Buffer, 10% Nucleotide Mix, 2% rTdT Enzyme (37 °C; 1 h)]. Reaction was stopped by immersion in 2xSSC, slides were washed in PBS, and nuclei were counterstained in 1:600 Spectral DAPI (PerkinElmer, USA) in TBST. Fluorescent slides were imaged on the ZEISS AXIO SCOPE upright fluorescent microscope (Zeiss, NSW, Australia) and the level of cardiomyocyte viability was quantified using MetaMorph® image analysis software (version 7.6; Molecular Devices, San Jose, CA, USA). An intensity threshold was manually selected to include all fluorescent apoptotic cells. The intensity of fluorescence was measured as integrated OD and normalised against the section area.
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8

Assessment of Mouse Tissue Viability

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Mouse tissue samples were taken, washed, and cut into 1 mm3 tissue pieces, which were then digested with 0.1% trypsin, filtered with a 40 μm pore size filter, and centrifuged to collect the precipitated cells. The cells were resuspended in a medium without phenol red and serum. Calcein-AM/PI Cell Viability/Cytotoxicity Assay Kit (C2015M, Beyotime) was applied for measuring the cell viability rate. Cells were mixed with 1× Assay Buffer, and dyed by 2 μM Calcein-AM and 4.5 μM PI at 37 °C for 30 min. A fluorescence microscope (Olympus IX51) was utilized for observing and Image Pro advanced software for evaluating the average fluorescence intensity [29 (link)].
The tissues were prepared into 4-μm-thick sections before experimentation. The apoptosis in cells and tissues was detected using TUNEL Fluorometric Kit (Promega, Madison, WI), with DAPI (D8200, Solarbio, Beijing, China) utilized for nuclear staining. Images were acquired with a fluorescence microscope at a magnification of ×400, and positive cells were counted at a magnification of ×200, with at least ten fields of view checked for each sample [29 (link)].
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