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7890a 5975c gc ms

Manufactured by Agilent Technologies
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The 7890A-5975C GC-MS is a gas chromatography-mass spectrometry (GC-MS) system designed and manufactured by Agilent Technologies. It is a combination of a gas chromatograph (7890A) and a mass spectrometer (5975C) that enables the separation, identification, and quantification of chemical compounds in complex mixtures.

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37 protocols using 7890a 5975c gc ms

1

Monosaccharide Analysis of Transgenic Wood

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Finely milled wood powder from all transgenic (3–5 per line) and WT (33) trees was used for monosugar analysis of the greenhouse-grown trees. Extractives were removed with 80% ethanol in HEPES buffer (4 mM, pH 7.5) for 30 min at 95 °C, followed by methanol:chloroform (1:1) extraction and two washes with acetone. To remove starch, the extractive-free wood powder was treated overnight at 37 °C with α-amylase from pig pancreas (Roche 10102814001; 100 units per 100 mg of wood) in potassium phosphate buffer (0.1 M, pH 7.0). For the quantification of monosugars, 0.5 mg of amylase-treated extractive-free wood was methanolyzed using 2 M HCl/MeOH [at 85 °C for 24 h; inositol (10 μg) as internal standard] followed by trisil reagent (1,1,1,3,3,3-hexamethyldisilazane + trimethylchlorosilane + pyridine, 3:1:9) derivatization using the Sylon HTP kit (Supelco; Sigma Aldrich) [53 ]. The monosugars were separated on a J&W DB-5MS column (30 m length, 0.25 mm diameter, 0.25 μm film thickness) (Agilent Technologies) and determined using GC–MS (7890A/5975C; Agilent Technologies).
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2

Comprehensive Characterization of Pt-based Samples

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The crystal structure of the Pt-based samples was characterized by X-ray powder diffraction (XRD) using a Rigaku D/max-ga X-ray diffractometer with graphite monochromatized Cu Kα radiation (λ = 1.54178 Å). Transmission electron microscopy (TEM) images of such samples were taken using a HITACHI HT-7700 microscope operated at 100 kV. High-resolution transmission electron microscopy (HRTEM) was performed using a FEI Tecnai F30 G2 microscope operated at 300 kV. High-angle annular dark-field scanning TEM (HAADF-STEM) and Energy dispersive X-ray (EDX) mapping analyses were taken on a FEI Titan ChemiSTEM equipped with a probe-corrector and a Super-X EDX detector system and operated at 200 kV. The percentages of the elements in the samples were determined using inductively coupled plasma atomic emission spectrometry (ICP-AES, IRIS Intrepid II XSP, TJA Co., USA). Gas chromatography mass spectrometer (GC-MS) measurements were performed on a GC-MS 7890A-5975C (Agilent) with molecular ion selective monitoring. All of these samples were diluted with acetone in fixed ratio before the GC-MS measurement.
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3

Methylation and Characterization of Polysaccharides

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DNP−1 (7 mg) was dried overnight at 60 °C in a vacuum oven and dissolved in 5 mL DMSO and DMSO/NaOH solution (80 mg/mL, 500 μL) via sonication for 60 min. Iodomethane solution (500 μL) was added and reacted for 40 min in an ice-water bath with continuous stirring. Thereafter, 2 mL water was added to terminate the reaction.
The methylated polysaccharide was added into 2 mL TFA and hydrolyzed for 30 min at 50 °C; it was then dried via rotary evaporator at 40 °C and dissolved in 2 mL water. NaBH4 (20 mg) was added and reacted for 30 min at 40 °C. Acetic acid was added and dried with nitrogen. Amounts of 2 mL acetic anhydride and 2mL pyridine were added and reacted for 1 h at 95 °C. Methanol was added and dried via rotary evaporator, repeated four times. Amounts of 2.5 mL water and 2.5 mL trichloromethane were added and mixed well through vortexing. The trichloromethane phase was analyzed through gas chromatography/mass (GC/MS) (GCMS-7890A/5975C, Agilent, Santa Clara, CA, USA) with an HP-5MS capillary column (initial temperature, 80 °C; increased to 280 °C at 5 °C/min; held for 1 min at 280 °C).
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4

GC-MS Analysis of Short-Chain Fatty Acids

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The analysis was performed using the GC‐MS 7890A‐5975C (Agilent Technology, USA). A FFAP capillary column (30m×0.25mm×0.25μm) was used for chromatographic separation, and helium (1 mL/min) was used as the carrier gas. The stepwise chromatographic thermal conditions were as follows: 100°C for 1 min, 5°C/min to 160°C, 40°C/min to 240°C, maintaining for 10 min. The mass spectrometer was set to scan mode at m/z 100–300 and selected ion monitoring mode at m/z 60 for acetate, butyrate, iso‐valerate, valerate, and caproate, maintaining for 4.72min、7.34min、8.90min、8.03min, and 11.26min respectively, as well as m/z 73 for propionate and iso‐butyrate for 5.90min and 6.31min separately.
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5

GC-MS analysis of bacterial SCFAs

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After measuring the optical density (OD600nm) of the overnight bacterial culture, supernatants were collected after centrifugation (15 min at 6000 rpm) and kept at −20 °C. SCFA were measured as previously described [35 (link),38 (link)] with slight modifications. Briefly, after the addition of the SCFA standards, each sample was acidified and then extracted using diethyl ether (Biosolve, Dieuze, France), with gentle stirring for 1 h and centrifugation for 2 min at 5000 rpm at 4 °C. The organic layers were derivatized using tert-butyldimethylsilyl imidazole (Sigma-Aldrich), and samples were incubated for 30 min at 60 °C before analysis by gas chromatography-mass spectrometry (GC-MS 7890A-5975C; Agilent Technologies, Montpellier, France) using a 30 m × 0.25 mm × 0.25 µm capillary column (HP1-MS; Agilent Technologies), as previously described [35 (link)]. The SCFA concentrations were reported at the mean concentrations divided by the optical density of the culture and expressed as mean ± SEM.
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6

Quantitative Analysis of CWAs by GC/MS

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The measurements were performed on the following systems at conditions and parameters listed in Table 1. System A—GC/MS 7890A/5975C (Agilent Technologies, Inc., Wilmington, USA); system B—GC/MS Intuvo 9000/5977B same manufacturer; and system C—mobile GC/MS EM 640 (Bruker Daltonik GmbH, Bremen, Germany).
Solutions of CWAs and internal standard were mixed in a 1 : 1 (v/v) ratio, and the mixture was introduced into the injection inlet of the GC/MS system. The linearity range of the chromatographic peak area as a function of the compound concentration was studied in parallel both for the CWA and the corresponding internal standard. Hence, mixtures of CWAs and standards of the same concentration were injected. Triplicate measurements were performed for each concentration of the compound and the standard.
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7

GC-MS Analysis of Polar Metabolites

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Polar metabolites were measured as previously reported44 (link),45 (link). In brief, metabolite pellets were derivatized by methoxyamination and silylation before splitless injection to an Agilent GC/MS (7890A/5975C) equipped with an HP-5MS column (60 m). Raw spectra were processed by deconvolution and alignment46 (link) and annotated by comparison to different mass spectral libraries and retention index matching. Intensities were normalized to internal standard and the sum of all annotated metabolites in a sample. MetaboAnalyst 4.0 was used for statistical analysis, principal component analysis, and heat map generation47 (link).
Analysis of cell culture media: Metabolites from cell culture medium were extracted as previously reported by acetonitril:methanol44 (link). Pellets were analyzed by GC/MS profiling in the same manner as endometabolites48 (link). Instead of peak sum normalization, only the internal standard as well as a correction (17:12) for dilution introduced by the NaCl rinsing in 3D cultures was applied for normalization.
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8

GC-MS Analysis of Chemical Compounds

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GC-MS analysis was carried out using an Agilent GC-MS 7890A/5975C series instrument with a 30 m×0.32 mm×0.25 µm capillary column (19 091S-433E HP-5MS; Agilent Technologies). Helium was the carrier gas with a flow velocity of 1 ml min−1 and 1 µl of sample was injected into the column in a splitless mode. The analytical conditions were an initial temperature of 50 °C, with isothermal operation for 1 min followed by heating to 120 °C at a constant rate of 20 °C min−1 and a final heating to 310 °C at a constant rate of 4 °C min−1 [49 (link)] with a 5 min isothermal operation. The column was directly connected to an electron ionisation mass spectrometer with an electron energy of 70 eV, producing ions that are characterised according to mass-to-charge ratio and relative abundance.
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9

GC-MS Analysis of Product Identification

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Gas chromatography mass spectra (GC-MS Agilent GC-MS 7890A-5975C) was chosen as the instrument for the product identification. GC-MS analysis was carried out with the column of HP-5 MS capillary column (30 m × 0.25 mm × 0.1 μm, Agilent). Helium was used as carrier gas, with a flow rate of 1.22 mL/min. The column temperature was set at 100°C for 1 min, then increased to 300°C at a rate of 10°C/min, and maintained for 15 min. Mass spectrum was set with ionization voltage of 70 eV, and ion source temperature of 200°C. Assay result was reflected in Figures S3S23.
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10

Quantification of Zinc Release Kinetics

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Following immersion of ZIF-8 (15 mg) within SBF (15 ml) for 1/3/6/12/24 h, this work collected supernatants to be the mother liquors. Thereafter, Zn content within mother liquors was analyzed through the axial viewing of ICP-OES (5110, Agilent). By using emission line of Zn (II) at 213.856 nm, GC-MS (7890 A/5975 C, Agilent) was adopted for analyzing mother liquors. In brief, an equivalent amount of (1 µl) solution was injected in the split mode under the 250 °C injection port temperature. Sample was later separated onto the pole from 60 °C to 1 min to 240 °C at the 15 °C min− 1 heating rate. Helium was utilized to be a carrier, and the downline rate was maintained at 35 cm/s under the constant current. In addition, quadrupole operation was conducted under the scanning mode within the 50–150 amu scanning range and 5 times/s scanning rate, with the interface and ion source temperatures being 230 and 200 °C, separately. Correction curve was constructed by the two-point external standard approach. Analysis was conducted three times.
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