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6 protocols using primary antibodies against nf κb p65

1

Western Blot Analysis of G6PD Mutation

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In the present study, the influence of the G6PD mutation was assessed by performing immunoblotting. Western blotting was performed as previously described (Dong et al., 2019 (link); Li et al., 2022 (link); Wang et al., 2022 (link)). Cytoplasmic and nuclear protein extraction was performed using NE-PER™ Nuclear and Cytoplasmic Extraction Reagents (Thermo Fisher Scientific, United States). Equal amounts of cytoplasmic or nuclear extracts were separated on 12% SDS polyacrylamide gels and transferred to PVDF membranes. Blots were probed with primary antibodies against NF-κB p65, β-actin or histone H3 (Cell Signaling Technology, Beverly, MA). Primary antibodies were detected with horseradish peroxidase-conjugated secondary antibody. Visualization was conducted using an ECL peroxidase substrate (Millipore, Germany). The molecular weight of NF-κB p65 and p-p65 is 65 kD, β-actin is 45 kD, and histone H3 is 17 kD.
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2

OLED-induced NF-κB p65 Localization

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RAW264.7 cells (3 × 105 cells/well) were seeded in 6-well plates with cover slips overnight. After OLED irradiation, cells on the cover slips were fixed in cold methanol for 10 min, then permeabilized with 0.1% Triton X-100. After blocking in 5% BSA for 1 h, cells were incubated with primary antibodies against NF-κB p65 (Cell Signaling Technology) at 4°C overnight. The primary antibodies were removed by washing three times with PBS, and the samples were further incubated with secondary antibody (Alexa Fluor 488-conjugated goat anti rabbit IgG; Life Technologies, Carlsbad, CA, USA) for 1 h at room temperature. Finally, the cells were mounted with Vectashield mounting medium, stained with DAPI (Vector Laboratories) for visualization of the nucleus, and photographed under a confocal microscope (Olympus).
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3

NF-κB Activation Assay in HK-2 Cells

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HK-2 cells were seeded, incubated, and treated with 0.1% DMSO, TanIIA (5 µM), and/or TNF-α (20 ng/ml) for 24 h. Cells were fixed with 4% paraformaldehyde for 30 min, permeabilized with 0.5% Triton X-100 for 20 min, and blocked with 5% BSA for 30 min at room temperature. Primary antibodies against NF-κB p65 (1:100, Cell Signaling Technology, MA, United States) were incubated with cells at 4°C overnight. After washing with PBS three times, an FITC-conjugated secondary antibody was added for 60 min at room temperature. All slides were mounted with DAPI-containing mounting medium and then analyzed with a fluorescence microscope (Leica Microsystems, Wetzlar, Germany)
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4

Nuclear and Cytosolic Protein Extraction

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Cytosolic and nuclear protein extracts from BMDMs were prepared using the ProteoExtract® Subcellular Proteome Extraction Kit (Merck) as previously described [12 (link)]. Cytosolic and nuclear proteins were separated by SDS-PAGE, transferred to PVDF membranes, blocked with 5% skim milk, and incubated with primary antibodies against NF-κB p65 (1:1000, Cell Signaling Technology), β-actin (1:10,000), and histone H3 (1:1000, Abcam). Membranes were incubated with HRP-conjugated secondary antibodies (1:10,000), and target protein bands were visualized using an ECL detection kit.
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5

Immunofluorescence Analysis of NF-κB and TLR-4 in Monocytes

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Monocytes from EN were plated on the cover slips and cultured at up to 50–60% confluence. After treatment, cells were washed with PBS, and fixed with fresh 4% paraformaldehyde solution for 15 min at room temperature. Cells were then washed twice with PBS, followed by incubation in 10% normal rabbit serum–blocking solution for 20 min at room temperature in a humidified chamber. Cells were incubated with specific primary antibodies against NF-κB p65 (Cell Signaling Technologies, Danvers, MA, USA) for 2 h at room temperature in a humidified chamber. Cells were washed 3 times in PBS and incubated with Alexa Fluor 488–conjugated goat anti-rabbit IgG (Life Technologies) for 45 min at room temperature in a humidified chamber. The cells were then washed in PBS, mounted with ProLong Gold Antifade Reagent with DAPI (Life Technologies). Images were acquired using Carl Zeiss LSM-710 confocal microscope with 10 fields of view. Above-mentioned protocol is also followed for TLR-4 surface expression studies with TLR-4 (Life Technologies) and LC-3 (Cell signaling Technologies) specific antibodies.
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6

NF-κB p65 Intracellular Localization

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Cells were fixed with 4% formaldehyde and then incubated with 5% goat serum. The intracellular location of NF-κB p65 was determined using primary antibodies against NF-κB p65 (Cell Signaling Technology, Beverly, MA, USA) and FITC-conjugated secondary antibody. Nuclei were counterstained with Hoechst (1 µg/mL). Images were obtained by fluorescent microscopy (OLYMPUS IX 81; Olympus, Tokyo, Japan).
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