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6 protocols using anti pd l1 clone 29e 2a3

1

Assessing T-cell Responses to Pancreatic Cancer Cells

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CD4+ and CD8+ T-cells were magnetically sorted (CD4 Microbeads Human; #130-045-101 and CD8 Microbeads Human; #130-045-201; Miltenyi Biotech), stained with 5 µM CFSE (#V12883; Invitrogen, Carlsbad, CA, USA) and incubated with mitomycin c-treated PDAC cell lines in U-bottom 96 well plates for 4 days. Allogeneic mature DCs were used as positive controls. Where indicated, purified endotoxin-free anti-MHC class I (clone W6/32; #311428; BioLegend), anti-MHC class II (clone TÜ39; #555556; BD Bioscience, Chicago, IL, USA), anti-LAG-3 (clone 17B4; Novus Biologicals; #NBP1-97657), anti-PD-L1 (clone 29E.2A3; #329716; BioLegend) or a combination of anti-LAG-3 and anti-PD-L1 antibodies were added at 10 μg/mL. The results are expressed as proliferation index, determined by dividing the mean fluorescence intensity (MFI) of CFSE in T-cells alone by the MFI of the T-cells in the co-cultures. Supernatants were collected for the assessment of IFN-γ and granzyme B by ELISA. Cells were stained with fluorochrome-labeled anti-CD4 (#317422; BioLegend), anti-CD8 (#300918; BioLegend) and anti-perforin (#353305; BioLegend) and processed for flow cytometry.
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2

Neutrophil Extracellular Trap Quantification

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Murine neutrophils were isolated following harvest of bone marrow from 8-week-old naïve B6 or PD-L1 KO mice. In brief, skin, muscle and fat were removed from femurs and tibias. Bone marrow was then flushed using a 27g needle and RPMI (Gibco). Following isolation of pure neutrophils, cells were then treated with 250-500 nM phorbol-12-myristate-13-acetale (PMA, Sigma-Aldrich) for 4 hours and then spun at 480xg for 5 minutes. The pellet was discarded and supernatant containing NET chromatin was spun at 18,000xg for 10 minutes. Quantification of NETs was analyzed using a Nano Drop (Thermo Fisher Scientific). In-vivo NETs quantification was analyzed using myeloperoxidase (MPO) (Roche) associated with DNA ELISA (Roche). For the human studies, fresh peripheral blood obtained from healthy donors or patients was stained with anti-CD15 (clone W6D3, BioLegend), anti-CD16 (clone 3G8, BioLegend), anti-citrullinated histone H3 (Abcam), anti-PD-L1 (clone 29E.2A3, Biolegend) and specific secondary anti-antibodies (Thermo Fisher Scientific).
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3

HCMV Infection and Surface Marker Analysis

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HCMV Merlin-infected 6-well dishes of HFFFs were detached with TrypLE Express (Invitrogen) or HyQTase (Thermo), washed in PBS, and resuspended in PBS + 2% fetal calf serum. Cells were incubated with primary antibody for 20–30 min on ice, followed by anti-mouse AF647 (Molecular Probes), and fixed with 1% paraformaldehyde. The following antibodies were used: anti-PD-L1 (clone 29E.2A3, Biolegend), anti-PD-L2 (clone MIH18, Biolegend), anti-CD276 (clone DCN.70, Biolegend), anti-CEACAM1 (clone ASL-32, Biolegend), anti-CD99 (clone HCD99, Biolegend), anti-Cadherin 11 (clone 667034, R and D systems), anti-MHC class I (clone W6-32, Serotec), anti-PCDHGC3 (cat no. ab89520, Abcam), anti-FAT1 (cat no. HPA023882, Sigma) and anti-ROR1 (clone 2H6, Abcam). Samples were acquired with a FACS Accuri flow cytometer and analyzed with FlowJo software (Tree Star).
For intracellular flow cytometry of HCMV IE1, infected cells were trypsinised 24h after infection, fixed in 4% paraformaldehyde then permeabilised using Triton X-100. Fixed cells were incubated with BSA/human serum for 30 min, followed by anti-iE1 antibody (Thermo MA1-7596) for 30 min then anti-mouse AF647.
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4

Modulation of Arterial CD8+ T Cells

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Arterial CD8+ T cells were cultured (5×105 per well) in the presence of 10 μg/ml anti-Tim-3 (clone F38-2E2, BioLegend), anti-PD-L1 (clone 29E.2A3, BioLegend), anti-Tim-3 plus anti-PD-L1, or isotype control. After 48 h, the culture supernatant was collected and further analyzed by FCM.
For intracellular cytokine analysis, brefeldin A (a Golgi inhibitor) (10 mg/ml, Biolegend, USA) was used for 4h (at the end of the culture) to block the secretion of cytokines into the media after the activation of cells by phorbol 12-myrstate 13-acetate (PMA) (50 ng/ml, 12h) and ionomycin (1μg/ml, 12h). Cells were harvested and analyzed by FCM for intracellular cytokine production.
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5

Cytotoxicity Assay for Allogeneic T-cell Responses

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To measure cytotoxicity in the allogeneic assays, purified activated CD4+ or CD8+ T-cells from HLA-A*02:01-negative donors were incubated with HLA-A*02:01-positive PDAC cell lines at a ratio of 2:1. Where indicated, soluble LAG-3 (#2319-L3-050; R&D Systems), anti-LAG-3 (clone 17B4; Novus Biologicals; #NBP1-97657), anti-PD-L1 (clone 29E.2A3; #329716; BioLegend) or a combination of anti-LAG-3 and anti-PD-L1 antibodies or soluble LAG-3 and anti-PD-L1 were added at 10 μg/mL. After overnight incubation, the cells were stained with BV421-conjugated anti-HLA-A2 (#740082; BD), Calcein-AM and Ethidium Homodimer 1 (#L3224; Invitrogen) to determine cell death. Target PDAC cells were gated on HLA-A2 positive cells. The cytotoxicity of peptide-stimulated CD4+ T-cells on Capan-1 cells was determined through measurement of lactate dehydrogenase (LDH) released into the culture medium with the CytoTox 96® Non-Radioactive Cytotoxicity Assay Kit (#G1780; Promega). The assay was carried out according to the manufacturer’s instructions. Results are expressed as relative cytotoxicity, that is, cell death of Capan-1 cells by peptide-stimulated CD4+ T-cells in relation to unstimulated CD4+ T-cells.
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6

PD-1 and PD-L1 Expression Analysis

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PD-1 and PD-L1 expression was detected with biotin-coupled anti–PD-1 (clone EH12.2H7, BioLegend) and anti-PD-L1 (clone 29E.2A3, BioLegend) antibody staining followed by streptavidin-allophycocyanin (APC) (BioLegend) staining. CD3 surface expression was detected by APC-conjugated anti-CD3ε antibody (clone OKT3, BioLegend). Cells were analyzed by flow cytometry using a Gallios flow cytometer (Beckman Coulter). Cell sorting was performed using a BD FACS Aria III cell sorter (Becton Dickinson). Data were analyzed using the software FlowJo v10 (TreeStar Inc.).
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