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10 protocols using cone arrestin

1

Immunohistochemical Characterization of Retinal Cells

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Eyecups were fixed in 4% PFA in 1X PBS for 20 min at room temperature and then cryoprotected in 30% sucrose in 1X PBS overnight at 4°C. Samples were embedded in OCT (Sakura Finetek), frozen on dry ice, and then sectioned at 16–18 μm on a cryostat (Leica). Slides were blocked with a solution containing 10% normal horse serum and 0.5% Triton X-100 in 1X PBS for 1 hr at room temperature and then stained overnight at 4°C with primary antibodies (Rho4D2 at 1:250 from Dr. Robert Molday, S Opsin at 1:400 from SCBT: sc-14363, Cone Arrestin at 1:1000 from Millipore: AB15282, Otx2 at 1:200 from R and D Systems: BAF1979) diluted in blocking solution. Slides were washed three times with 1X PBS the following day and then incubated in fluorescently labeled secondary antibodies diluted in blocking solution for 2 hr at room temperature, stained with DAPI, washed, and coverslipped using Fluoromount-G (SouthernBiotech). An Olympus FluoView FV1000 was used for confocal microscopy. Cells were counted from single plane confocal images taken at fixed settings. Counts in the central retina were taken adjacent to the optic nerve head (50 μm from the nerve head on the ventral side) and counts in the peripheral retina were taken 50 μm from the peripheral edge on the ventral side.
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2

Immunohistochemical Analysis of Retinal Cell Markers

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The following primary antibodies were used: glutamine synthetase (1:250; BD Biosciences), rhodopsin (1:500; Millipore), cone arrestin (1:500; Millipore), PKCα (1:250; BD Biosciences), MPP4 AK4 (1:200; homemade34 (link)), CRB1 AK2 (pH 1.5) (1:200; homemade8 (link)), CRB2 (1:2008 (link)), p120-catenin (1:100; BD Biosciences), GFAP (1:200; Dako), CD11b (1:100; BD Biosciences); PLVAP (1:200; BD Pharmingen), and VE-cadherin (1:100; BD Biosciences).
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3

Stem Cell and Apoptosis Markers in Retina

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Antibodies against Ki67 (ABclonal, A2094, rabbit), Pax6 (BioLegend, 901301, rat), Nestin (BD, 556309, rat), Sox2 (Abcam, ab97959, rabbit), CD133 (Invitrogen, PA5-38014, rabbit), Chx10 (Invitrogen, PA5-116119, rabbit), Rhodopsin (Invitrogen, MA5-11741, mouse), Cone-arrestin (Millipore, MAAB15282, rabbit), cleaved-Caspase-3 (Cell Signaling Technology, #9661, rabbit), PARP (Cell Signaling Technology, #9532, rabbit), CD9 (Abcam, ab92729, rabbit), CD63 (Abcam, ab217345, rabbit), Alix (Abcam, ab186429, rabbit), Vdac1 (Abcam, ab15895, rabbit), and β-actin (GeneTex, GTX11003, mouse) were used. TUNEL assay kit was purchased from Roche. Opti-MEM, neurobasal medium, Lipofectamine 2000, and LTX were obtained from Promega. Fetal bovine serum (FBS) was from Gibco.
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4

Immunohistochemistry of Retinal Cones

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Cryosections (15 μm) on Millennia 1000 slides (StatLab) were fixed for 5 min in 4% PFA in PBS, rinsed three times in PBS, permeabilized in 0.5% Triton-X100/PBS, and incubated with primary antibodies diluted in 10% donkey serum/0.5% Triton X-100 in PBS. Secondary antibodies conjugated to Alexa 594, 488 or 647 (Invitrogen) were incubated in the same conditions. Following DAPI staining, slices were mounted in fluorescent mounting medium (DAKO). Cone arrestin (Millipore) antibody was used in this study. A Nikon Eclipse Ti fluorescence microscope, which was coupled to an LED light source (Lumencor), was used to image the sections with either 20X (n.a. 1.0) or 40X (n.a. 1.4) objectives. The NIS element software package (Nikon) was used for the image acquisition and analysis. The number of cones was counted with the quantification tools from NIS-Elements (Nikon). Cones labelled with specific markers were counted in at least two fields from at least two central retina slices crossing the optic nerve without tracking the orientation of retina. The total number of cones was divided by the length of a reference line drawn on the apical row of the ONL.
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5

Immunohistochemical Profiling of Retinal Cells

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Retinal sections were stained with the following antibodies with our published protocols (34 ,35 (link)) Cone-arrestin (rabbit polyclonal, 1:1,000; Millipore), PKCα (rabbit polyclonal, 1:5,000; Sigma), recoverin (rabbit polyclonal, 1:2,000; Millipore), calbindin D28k (rabbit polyclonal, 1:1,000; Swant), neurofilament-RT97 (mouse monoclonal, 1:1,000; Millipore), parvalbumin (rabbit polyclonal, 1:3,000; Swant), synaptophysin (mouse monoclonal, 1:2,000; Millipore), RPE65 (mouse monoclonal, 1:1,000; Millipore), type IV collagen (rabbit polyclonal, 1:1,000; Millipore), MAB1281 (mouse monoclonal, 1:300; Millipore), nestin (rabbit polyclonal, 1:2,000; Millipore), GFAP (rabbit polyclonal, 1:1,000; Sigma), S100β (mouse monoclonal, 1:250; Sigma), Ki67 (rabbit polyclonal, 1:500; Millipore), TuJ1 (mouse monoclonal, 1:1,000; Sigma), STEM121 (mouse monoclonal, 1:300; StemCells). Anti-mouse or rabbit secondary antibodies conjugated to Alexa Fluor-488 or Alexa Fluor-568 (Life Technologies) were used and counterstained with 49,69-diamidino-2-phenylindole (DAPI). Images were taken with a confocal microscope (Eclipse C1si; Nikon Instruments, Inc., Melville, NY).
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6

Immunohistochemical Analysis of Retinal Proteins

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The following primary antibodies were used: β-catenin (1:250; BD Biosciences Cat# 610153, RRID:AB_397554), catenin p120 (1:250; BD Biosciences Cat# 610134 RRID:AB_397537), CD44 (1:400; BD Biosciences Cat# 553132, RRID:AB_394647), cone arrestin (1:500; Millipore Cat# AB15282, RRID:AB_1163387), CRB1 AK2 (1:200; homemade) [6 (link)], CRB2 SK11 (1:200; homemade), glial fibrillary acidic protein (GFAP) (1:200; Dako Cat# Z0334, RRID:AB_10013382), GFP (Millipore Cat# MAB3580, RRID:AB_94936), glutamine synthetase (GS) (1:250; BD Biosciences Cat# 610518, RRID:AB_397880), MPP4 AK4 (1:300; homemade) [6 (link)], MPP5/PALS1 SN47 (1:200; homemade), MUPP1 (1:200; BD Biosciences Cat# 611558, RRID: AB_399004), M-Opsin (1:250; Millipore Cat# AB5405, RRID: AB_177456). PAR3 (1:100; Millipore Cat# 07-330, RRID: AB_2101325), PKCα (1:250; BD Biosciences Cat# 610107 RRID: AB_397513), peanut agglutinin (PNA) (1:200; Vector Laboratories Cat# RL-1072, RRID: AB_2336642), recoverin (1:500; Millipore Cat# AB5585, RRID: AB_2253622), rhodopsin (1:500; Millipore Cat# MAB5356, RRID: AB_2178961), SOX9 (1:250; Millipore Cat# AB5535, RRID: AB_2239761).
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7

Retinal Cryosectioning and Immunohistochemistry

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Animals were euthanized at the end of experiment. Eyes were collected and processed for cryostat sections (10 µm) as described in our previous studies.43 (link),45 (link) Four sections/slide were collected in five series and stored at −80 °C. One slide from each series was stained with cresyl violet to assess the integrity of retinal lamination. Other slides were used for antibody staining, following previously described protocols, and were examined by regular light and confocal microscopy (Eclipse C1si; Nikon Instruments, Inc., Melville, NY). The following antibodies were used: CNTF (rabbit polyclonal, 1:500, Santa Cruz Biotechnology, Dallas, TX), Cone-arrestin (rabbit polyclonal, 1:1,000; Millipore, Burlington, MA), and protein kinase C-alpha (rabbit polyclonal, 1:5000; Sigma, St Louis, MO). Anti-rabbit secondary antibodies conjugated to Alexa Fluor-488 (Life Technologies, Carlsbad, CA) were used and sections were counterstained with 4′, 6-diamidino-2-phenylindole.
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8

Immunohistochemistry of Mouse Retinal Cones

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Eyes, enucleated from euthanized mice, were flash-frozen in liquid nitrogen, embedded in Tissue-Tek optimal cutting temperature compound (Electron Microscopy Sciences, Hatfield, PA, USA), and cryosections were prepared for immunohistochemistry as previously described.12 (link) Sections were incubated with fluorescein isothiocyanate–conjugated peanut agglutinin (FITC-PNA, catalog number L7381; Sigma-Aldrich Corp.) or cone arrestin (catalog number AB15282; Millipore, Temecula, CA, USA) to detect cone PRCs. Additional cryosections were incubated with rabbit anti-glial fibrillary acidic protein (GFAP) (catalog number Z0334; Dako Corp., Carpintaria, CA, USA) to detect gliosis. Alexa Fluor 555 and Alexa Fluor 488 anti-rabbit IgG (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA) were used as the secondary antibody for cone arrestin and GFAP, respectively. Coverslips were mounted using Fluoroshield with 4′,6-diamidino-2-phenylindole (DAPI) (Sigma-Aldrich Corp.). Retinas were examined using a Zeiss (Carl Zeiss, Göttingen, Germany) Axio Imager D2 microscope equipped with a high-resolution camera and processed using Zeiss Zen23pro software.
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9

Cone Arrestin Immunostaining in Mouse Retina

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Wax embedded tissue sections were kept at 37 °C overnight. After deparaffinization, hydration and antigen retrieval, the sections were blocked with 5% BSA for 1 hour at room temperature. Sections were incubated with cone arrestin (1:1000; Millipore, Germany) primary antibody reconstituted 1 × PBS containing 1% BSA, overnight at 4°C in humid conditions. Subsequent to washings with 1 x PBS, the sections were incubated with corresponding FITC conjugated secondary antibody for 2 hours at room temperature, followed by three washings with 1 x PBS and finally staining with DAPI (Sigma-Aldrich, USA) for 15 min. Five fields per section were selected for examination using an Olympus lX-81 microscope (Olympus, USA) while three sections (30 μm apart) from each eye (n = 3 mice per group) were used for analysis.
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10

Immunohistochemical Antibody Characterization

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Polyclonal LDHA, LDHB, and aldolase C antibodies were purchased from Proteintech (Rosemount, IL). Rabbit polyclonal red/green cone opsin (M-opsin), S-opsin, cone arrestin, actin, and rabbit and mouse secondary antibodies were obtained from Millipore (Billerica, MA). Monoclonal 1D4 rhodopsin antibody was a kind gift from Dr. James F. McGinnis (University of Oklahoma Health Sciences Center). DAPI used for nuclear staining was procured from Invitrogen-Molecular Probes (Carlsbad, CA). Polyclonal pPKM2 (Y105), PKM2, PKM1, PDH, hexokinase 1, and hexokinase 2 antibodies were obtained from Cell Signaling (Danvers, MA). The monoclonal anti-arrestin antibody was a kind gift from Dr. Paul Hargrave (University of Florida, Gainesville). Polyclonal glial fibrillary acidic protein (GFAP) was purchased from Dako (Carpinteria, CA). Monoclonal GS antibody was purchased from Abcam (Cambridge, MA). The monoclonal Pde6β antibody was purchased from Santa Cruz Biotechnology (Dallas, TX).
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