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4 protocols using donkey anti rabbit hrp

1

Immunostaining of 5-HT2AR in Mouse Brain and DRG

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Immunostaining was carried out in mouse brain and L5-L6 DRG samples. For immunohistofluorescence, sections were incubated with two polyclonal primary antibodies against mCherry (1:200, Origene, MD, USA) and 5-HT2AR (1:50, Neuromics, MN, USA) overnight at 4°C followed by a secondary donkey anti-goat Alexa 594 or anti-rabbit Alexa 488-conjugated antibody (1:100). Sections were counterstained with a mounting medium with DAPI. For immunohistochemistry, sections were incubated with the polyclonal anti-5-HT2AR antibody (1:50) overnight at 4°C followed by a secondary donkey antirabbit-HRP (1:5000, Abcam) 90 min at RT and finally visualized in brown with DAB (Sigma). The specificity of the primary antibody against 5-HT2AR was previously confirmed in experiments with knockout mice (Moreno et al., 2016 (link)). Stained samples were inspected under a Zeiss 710 confocal laser-scanning microscope (CLSM). To ensure appropriate visualization of the labeled elements and to avoid false positive results, the emission from the argon laser at 488 nm was filtered through a band pass filter of 505–530 nm and color-coded in green. The emission following excitation with the helium laser at 543 nm was filtered through a band-pass filter of 560–615 nm and color coded in red.
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2

Western Blot Analysis of MEC1 Protein

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Triplicate MEC1 protein samples (15 μg) from each condition were separated by 10% SDS-PAGE, and transferred to a PVDF membrane (Immun-Blot™, Bio-Rad Laboratories, Hercules, CA, USA). After blocking with 5% skim milk in TBST (25 mM Tris/HCl, 137 mM NaCl, 2.7 mM KCl and 0.1% (v/v) Tween-20, pH 7.6), the membranes were incubated in TBST (4°C, 16 h) with rabbit monoclonal antibodies against BRCA1, NCL, NFKB2 p100/p52 or MYC (Cell Signalling Technology, Danvers, USA) or mouse monoclonal antibody against CCND1 (Cell Signalling Technology) and actin (Abcam, Cambridge, USA), followed by incubation (1 h, room temperature) with horse radish peroxidase (HRP)-conjugated secondary antibodies: goat-anti-mouse-HRP (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA) or donkey-anti-rabbit-HRP (Abcam, Cambridge, UK). Proteins were visualized using Rapid Step ECL Reagent (Merck, Kilsyth, Victoria, Australia) and ECL chemiluminescence film (GE Healthcare, Little Chalfont, Buckinghamshire, UK). Films were scanned on a Molecular Imager GS-800™ densitometer (Bio-Rad, Hercules, CA, USA). Bands were quantified using ImageQuantTL density analysis software (GE Healthcare, Little Chalfont, Buckinghamshire, UK) and two-tailed homoscedastic student t-tests were performed on log2-transformed, actin-normalized ratios to the control samples.
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3

Western Blotting Protocol for Cyp1A1 Expression

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A total of 25 µg of proteins was loaded on a 12% NuPAGE (Novex, CA) and transferred onto PVDF membranes (Novex, CA) as described (Mahmoudian-Sani et al. 2017 (link); Rafiee et al. 2019 ). Membranes were blocked with 5% skim milk in Tris-buffered saline and 0.01% tween 20 (TBST buffer) for 30 min at room temperature and then incubated overnight at 4 °C with either rabbit polyclonal anti-Cyp1A1 (Abcam, CA) or mouse monoclonal anti-GAPDH (Abcam, CA), diluted in TBST buffer containing 1% skim milk. After washing in TBST, the blots were incubated with secondary donkey anti-rabbit-HRP (Abcam, CA) or goat anti-mouse-HRP (Santa Cruz, CA) antibodies for 2 h, followed by development with Pierce™ ECL Plus western blotting substrate (Thermo Fisher Scientific, USA). The bands were visualized by imaging using a LI-COR Scanner and analyzed via densitometry (LI_COR Biosciences, NE).
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4

Isolation and Detection of Liver Membrane Proteins

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Membrane fractions were isolated from livers from 1 g of tissue per sample [32 (link)] in the presence of a protease inhibitor cocktail from Roche. Membrane pellets were resuspended in 1.0 mL Urea Lysis Buffer (8.9 M urea, 2%  β-mercaptoethanol (v/v), 1% NP-40 (v/v)). 20 μg of liver membrane proteins was loaded onto a 4–12% Bis-Tris MOPS NOVEX gel (Life Technologies, Carlsbad, CA) for Western analysis. As a loading control, 20 μg from the same aliquot was loaded side by side on the same gel for Coomassie staining (Simply Blue, Life Technologies). After electrophoresis, half the gel was used for Western blotting onto PVDF membranes (0.45 μm pore size) (Immobilon-P, Millipore, Billerica, MA) and the other half was Coomassie-stained for protein. The primary antibody was a rabbit polyclonal antibody against residues 450–509 from mouse SR-BI (Novus Biologicals #NB400-101, Littleton, CO) and the secondary antibody was donkey anti-rabbit-HRP (Abcam #7083, Cambridge, MA).
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