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207 protocols using plasmid mini kit

1

Transient Transfection for Protein Expression

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Recombinant plasmid pGFP-N2-A1 was purified using a Plasmid Mini kit (Qiagen) and transfected into cells (1 × 10
5cells per well) using Cellfectin reagent for Sf9,
B. mori(BmN) and
Trichoplusia ni(HighFive) cells and FECTIN2000 for HeLa cells (Invitrogen) according to the manufacturer’s protocol. Plasmid Mini kit (25) with 25 QIAGEN-tip 20 columns, reagents, buffers, was from QIAGEN (Germantown, MD). The insect cells were incubated in Grace medium and 1,640 medium was used for HeLa cells supplemented with 10% fetal bovine serum for 24 h and then GFP activity was observed under a fluorescence microscope (Olympus). Transfection efficiency was assayed and a comparable result was obtained when parallel cell samples were measured by flow cytometer (BD FACSCalibur, BD Biosciences).
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2

Plasmid Transfection Optimization

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The transfection method was based on previous reports with slight modifications22 (link). Plasmids were prepared using Plasmid Mini kits (Qiagen). SF9, BmE, and BmNS cells were equivalently transfected in six-well culture plates with 1 mg of each plasmid DNA and 3 μl X-tremeGENE HP DNA Transfection Reagent (Roche) in a final volume of 500 μl antibiotic-free serum-free medium. After 5 h, medium was replaced with complete medium for 3 days.
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3

Cloning and Amplification of Rio Mamore Orthohantavirus

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Rio Mamore orthohantavirus (strain HTN-0007-TPV 4645) were amplified as previously described43 (link). These PCR products (~ 324 bp and ~ 264 bp for Gn and S, respectively) were purified and cloned into pGEM-T Easy Vector (Promega Corporation, WI, USA), according to manufacturers’ guidelines, and used to transform DH10β E. coli cells. Colonies of bacteria were selected in LB medium supplemented with ampicillin 100 ng/ul and confirmed by PCR using same primers of product amplification. Plasmid preparation, from positive clone colonies, was isolated with Plasmid Mini Kits (QIAGEN, Germany) and used as positive controls for PCR reactions.
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4

Plasmid Transfection Protocol for Cell Culture

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Before transfection, the highly pure plasmids were prepared using Plasmid Mini Kits (Qiagen, Germany). Cells in log phase were cultured in 6-well plates or 24-well plates for approximately 24 h before transfection. Each well was transfected with plasmids and X-treme GENE HP DNA Transfection Reagent (Roche) mixture, which was mixed in 200 μl antibiotic-free and serum-free medium according to manufacturer’s instruction. Transfection medium was removed and medium containing antibiotic and serum were added after 6 h. The mixture was then cultured for 72 h.
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5

Cloning and Expression of Microbial Transporters

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The genes encoding the candidate transporter proteins listed in Table 1 were chemically synthesized (without optimization) in pTWIST_Kan vectors (all DNA sequences are given in Table S8). The Bifidobacterium breve Hly_III, Bacteroides henselae MFS, Corynebacterium propinquum MmpL, Winogradskyella, and Bacteroides dorei YgjP encoding genes were directly subcloned from the corresponding pTWIST constructs into the EcoRI and HindIII sites of pBAD24 [67 (link)]. The Chryseobacterium piperi YgjP encoding gene was directly subcloned from the corresponding pTWIST construct into the EcoRI and PstI sites of pBAD24. The Acidobacteriota bacterium (Ac_UPS) gene was amplified from the pTWIST clones using the following primer pairs: F_Ac_DMT_NheI_PBAD24/R_Ac_DMT_XbaI_PBAD24; then, it was cloned into the NheI and XbaI sites of pBAD24. E. coli transformations were performed using the CaCl2 chemical transformation procedure [68 ]. Transformants were selected on LB agar supplemented with ampicillin. The clones were validated through Sanger sequencing and PCR analyses of the plasmids extracted using QIAGEN (Germantown, MD, USA) plasmid Mini kits with the appropriate primer pairs. All primers used in this study are listed in Table S9.
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6

Transfection of Silkworm Ovary Cells

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The cell line, BmN-SWU1, derived from silkworm ovaries, was cultured at 27 °C with TC-100 insect medium (United States Biological, Swampscott, MA, USA) supplemented with 10% fetal bovine serum (BI, Kibbutz Beit Haemek, Israel), 100 U/mL penicillin, and 100 μg/mL streptomycin (Gibco, Grand Island, NE, USA) [22 (link)]. Before transfection, pure plasmids were prepared using Plasmid Mini Kits (Qiagen, Hilden, Germany). Transfections with a mixture of plasmid and X-treme GENE HP DNA Transfection Reagent (Roche, Basel, Switzerland) were allowed to stand for 30 min, mixed in a 200 μL antibiotic-free and serum-free medium according to manufacturer instructions. After 6–8 h post transfection, the medium was replaced with normal medium.
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7

Plasmid Extraction for Carbapenemase Detection

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Plasmid extraction was used for detection of carbapenemase encoding genes 15 (link) . All 170 carbapenem resistant Enterobactericeae isolates were processed for plasmid extraction. (QIAGEN® Plasmid Mini Kits). The plasmid DNA were stored at -20°C for further use.
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8

Pollen Tube Transformation and Analysis

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Pollen Tube Growth Assay Flowering plants were used for collecting mature pollen grains used for bombardment-mediated transformation as described below. For transient expression of CNGCs and CaM2 in pollen tubes, the coding regions of CNGCs and CaM2 were PCR-amplified with specific primers and cloned into pGEM-T Easy vector (Promega, USA). After sequencing, the cDNAs were cloned into pBI221 vector (CLONTECH Laboratories, Mountain View, CA) in which CaMV 35S::GUS was replaced with the LAT52 promoter driving GFP (Twell et al., 1990) . All resulting constructs were purified using plasmid mini kits (QIAGEN, Germany). Mature pollen grains were collected from N. benthamiana plants right before each experiment, and were transformed with construct DNA using a particle bombardment procedure described previously (Fu et al., 2001) . Briefly, 0.5 mg of gold particles was coated with 0.8 mg of plasmid DNA. Co-bombardments were achieved by coating particles with 1 mg of each plasmid construct. The transformed pollen grains were incubated at 28 C for 3 hours. For quantitative analysis of growth phenotype, images of transformed pollen tubes were captured using a cooled CCD camera (model DP70) attached on an Olympus microscope (model BX51). Pollen tube length and maximum tip width were measured through Zeiss LSM image browser (version 3.2).
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9

Arabidopsis Protoplast Transfection Protocol

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Plasmids used for transfection (p35S::CNGC18-YFP, p35S::CNGC8-YFP, p35S::CNGC18-YFP N , p35S::CNGC8-YFP C ) were transformed into E. coli and purified with plasmid mini kits (QIAGEN, Germany). Arabidopsis protoplasts were isolated and transfected as previously described (Yoo et al., 2007) . Briefly, 10-15 Arabidopsis leaves were cut into 0.5 mm wide strips that were placed into 15 mL enzyme solution for vacuum infiltration. The protoplasts in the enzyme solution were collected by passing a nylon mesh and centrifuging at 150 g for 3 min. Protoplast pellets were resuspended in 5 mL cold W5 solution and used for transfection by mixing 10 mL plasmid DNA (about 1 mg/mL) and 110 ml 40% PEG for every aliquot of 100 mL protoplasts. The mixture was incubated for 30 minutes at room temperature, followed by addition of 500 mL W5 solution and centrifugation at 300 g for about 2 min. and the protoplast pellet was resuspend in 1mL W5 solution and incubated overnight. YFP fluorescence was visualized with a confocal scanning microscope (Zeiss LSM510 META, Germany).
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10

Cloning and expression of HS3ST1 enzyme

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Plasmid EX-TO223-M13 containing flag tagged HS3ST1 enzyme sequence was purchased from GeneCopoeia. Bacterial transformation of E.coli DH5α (Invitrogen) was performed using the heat shock method. Bacterial cells lysis and plasmid purification were performed using Plasmid Mini Kits (Qiagen). To generate an empty plasmid (plasmid without HS3ST1 sequence), 3 μg of plasmid were digested with 30U of BsrGI (Bsp 1407I, ThermoFisher). The digested plasmid was extracted using QIAquick Gel Extraction Kit Plasmid extraction. The final plasmid was ligated 3h at room temperature using T4 DNA ligase. Cells transfections were performed using Effectene Reagent (Qiagen) in combination with an enhancer and a DNA-condensation buffer. The following day, fresh media containing 200 µg/mL of selective antibiotic G418 was added to the transfected cells. Colonies were isolated using cloning cylinders.
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