The largest database of trusted experimental protocols

21 protocols using anti cd38 apc

1

Characterization of Human and Rhesus HSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Freshly thawed human and rhesus CD34+ cells were incubated with human Fc Block (Becton Dickinson (BD), Franklin Lakes, NJ, USA, 564219) for 10 minutes at room temperature (RT) to minimize non-specific antibody interactions. These cells were then subjected to a 30-minute staining procedure on ice (all antibodies used in 1:25 dilution), utilizing two distinct antibody panels with or without PE-anti-cMPL (Miltenyi Biotech) or PE-anti-cKIT (BioLegend, San Diego, CA, USA, 105807). The human HSC panel included FITC-anti-CD34 (BD, 560942), APC-anti-CD38 (BD, 340439), PE-Cy7-anti-CD90 (BD, 561558), APC-H7-CD45RA (BD, 560674), and PE-Cy5-anti-CD49f (BD, 551129) antibodies. The rhesus HSC panel comprised BV421-anti-CD34 (BD, 740081), APC-anti-CD38 (NHP Resources), PE-Cy7-anti-CD90 (BD, 561558), APC-H7-CD45RA (BD, 561212) and PE-Cy5-anti-CD49f (BD, 551129) antibodies. In a specified set of experiments, antibodies underwent conjugation employing a PE conjugation lightning-link kit (Abcam, Waltham, MA, USA, ab102918). A detailed inventory of the antibodies utilized is available in Key Resources Table. Stained cells were subjected to a single wash with FACS buffer and then filtered through 40 μm cell strainers. Quantitative and qualitative analyses of surface marker expression were then conducted using an LSR II Fortessa flow cytometer (BD).
+ Open protocol
+ Expand
2

Quantification of B Cell Subsets

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fasting venous blood samples were collected from individual subjects, and peripheral blood mononuclear cells were isolated by density‐gradient centrifugation using Ficoll‐Paque Plus (Amersham Biosciences, Little Chalfont, UK). Peripheral blood mononuclear cells at 1 × 106/tube were stained in duplicate with APC‐H7‐anti‐CD3, PerCP‐Cy5.5‐anti‐CD19, PE‐Cy7‐anti‐CD27, APC‐anti‐CD38, PE‐anti‐CD138, PE‐CF594‐anti‐CD20, FITC‐anti‐IgD (BD Biosciences, San Jose, CA, USA) in the dark at room temperature for 30 min. After being washed, the cells were fixed and permeabilized using a fixation/permeabilization kit (BD Biosciences), followed by intracellular staining with BV510‐anti‐IgG, and BV421‐anti‐IgM (BD Biosciences). Negative controls were stained with isotype‐matched control antibodies (APC‐H7‐anti‐IgG1, PerCP‐Cy5.5‐anti‐IgG1, PE‐Cy7‐anti‐IgG1, APC‐anti‐IgG1, PE‐anti‐IgG1, PE‐CF594‐anti‐IgG2b, FITC‐anti‐IgG2a, BV421‐anti‐IgG1, BV510‐anti‐IgG1; BD Biosciences). The percentages of different subsets of B cells were characterized on a FACSAria II (Becton Dickinson, San Jose, CA, USA) and at least 50,000 events were analysed by FlowJo software (v5.7.2; TreeStar Inc., Ashland, OR, USA). The number of each type of cells tested was calculated, according to the percentages of this type of cells multiplied lymphocyte counts.
+ Open protocol
+ Expand
3

Phenotypic Analysis of B-cell Subsets in Autoimmune Diseases

Check if the same lab product or an alternative is used in the 5 most similar protocols
Peripheral blood mononuclear cells (PBMCs) from IgG4-RD, pSS, and HC were prepared according to standard Ficoll-Hypaque procedures (Pharmacia Biotech, Uppsala, Sweden), and were stained with PE-CY7-anti-CD19, FITC-anti-CD24, APC-anti-CD38, PE-anti-CD40, PE-anti-CD80, PE-anti-CD86, PE-anti-BAFF-R, PE-anti-TACI mAb (BD Biosciences, San Jose, CA, USA), and PE-anti-BCMA mAb (Biolegend, San Diego, CA, USA) or isotype-matched controls. After incubation for 30 minutes at 4°C, the cells were washed and resuspended in fluorescence-activated cell sorter (FACS) staining buffer (BD Biosciences). All experiments were analyzed by gating on lymphocytes according to forward side scatter/side light scatter; dead or dying cells or granulocytes were excluded. B-cell subsets were gated on CD19, and then gated on CD24 and CD38
[17 (link)]. Flow cytometry analysis was performed immediately after sample preparation. All samples were analyzed using a FACS AriaII (BD Biosciences)and data were analyzed by FlowJo v.7.6.4 Software (Tree Star, Stanford University, CA, USA).
+ Open protocol
+ Expand
4

Multi-Dimensional Immune Cell Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Single-cell suspensions were stained for 30 min using the following fluorophore-conjugated antibodies: FITC anti-CD3 (BD Biosciences Cat# 555332, RRID:AB_395739), APC/Cy7 anti-CD4 (BD Biosciences Cat# 341095, RRID:AB_400218), Percp-Cy5.5 anti-CXCR5 (BD Biosciences Cat# 562781, RRID:AB_2313576), PE anti-PD-1 (BD Biosciences Cat# 560795, RRID:AB_2033989), PE/Cy7 anti-CCR6 (BD Biosciences Cat# 560620, RRID:AB_1727440), APC anti-CCR6 (BD Biosciences Cat# 560619, RRID:AB_1727439), PECy7 anti-CXCR3 (BD Biosciences Cat# 560831, RRID:AB_2033944), APC anti-CXCR3 (BD Biosciences Cat# 565223, RRID:AB_2687488), FITC anti-CD19 (BD Biosciences Cat# 555412, RRID:AB_395812), BV421 anti-CD27 (BioLegend Cat# 302823, RRID:AB_10900425), APC anti-CD38 (BD Biosciences Cat# 555462, RRID:AB_398599), PECy7 anti-IgD (BD Biosciences Cat# 555776, RRID:AB_396111), and PE anti-CD138 (BD Biosciences Cat# 552026, RRID:AB_394323). For intracellular staining, cells were permeabilized using the Foxp3 Staining Buffer Set (eBioscience), then stained with PECy7 anti-Ki67 (BD Biosciences Cat# 561283, Clone B56), PE anti-Foxp3 (BD Biosciences Cat# 560082, RRID:AB_1645509), and PE anti-Bcl2 (BD Biosciences Cat# 340576, RRID:AB_400061). All samples were analyzed with an LSRFortessa flow cytometer (Beckton Dickinson), and data were processed with FlowJo software, version 10 (TreeStar, Inc.).
+ Open protocol
+ Expand
5

Fluorescence-Activated Cell Sorting and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
For fluorescence-activated cell sorting or analysis, half million cells were stained with fluorophore conjugated antibodies in a buffer (0.5% bovine serum albumin in phosphate-buffered saline) for 15 min on ice. Antibodies used for analysis and sorting were: APC-anti CD38, FITC-anti CD38, PE-anti CD90, APC-anti-CD11b (BD Pharmingen), and rabbit polyclonal anti-acetylated FOXO1 (Santa Cruz Biotech). Apoptosis was analyzed by annexin-V (BD Pharmingen) staining. Flow cytometry was performed at the City of Hope Flow Cytometry Core.
For Western blot, rabbit monoclonal anti-human SIRT1 (Epitomics), mouse monoclonal anti-Ku70 (Neomarker) were used. To analyze Ku70 acetylation, we pulled down Ku70 from total cell lysate with anti-Ku70 and protein A/G plus-agarose beads (Santa Cruz) followed by acetylation detection with the rabbit anti-acetyl lysine antibody (Cell Signaling).
+ Open protocol
+ Expand
6

Characterizing MICA, NKG2D, and DNAM-1 expression in multiple myeloma

Check if the same lab product or an alternative is used in the 5 most similar protocols
Analysis of MICA expression on patient-derived PCs was performed by gating the CD38+CD138+ PC population using the antibodies anti-MICA (clone 159227, R&D Systems, Minneapolis, MN, USA), anti-CD38/APC, and anti-CD138/FITC (both from BD Bioscience, San Jose, CA, USA) as previously reported (16 (link)); samples were acquired using a FACSCanto (BD Biosciences, San Jose, CA, USA) and a FACSCalibur (Becton Dickinson). Analysis of NKG2D and DNAM-1 on NK cells from PBMCs or BM aspirates was performed by gating on the CD45+CD138CD3CD56+ population using the antibodies anti-CD3/allophycocyanin-H7, anti-CD56/PE, anti-CD138/FITC, anti-CD45/PE-Cy7, anti-NKG2D/APC, or anti-DNAM-1/APC (BD Bioscience). In some experiments, anti-CD16/PerCP mAb was also used (BD Bioscience). In the experiments relative to Figure 4 and Figure S2 in Supplementary Material, all the patients-derived samples were acquired using a FACSCanto (BD Biosciences, San Jose, CA, USA). In the experiments relative to Figure 5, PBMCs derived from healthy donors were incubated with medium alone or serum derived from MGUS or MM patients for 16 h. After harvesting, cells were stained with antibodies from BD Bioscience: anti-CD3/PerCP, anti-CD56/APC, and anti-NKG2D/PE; samples were acquired using a FACSCalibur (Becton Dickinson).
Data analysis was performed using the FlowJo 9.3.2 program (TreeStar, Ashland, OR, USA).
+ Open protocol
+ Expand
7

NK Cell Activation Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
NK primary cells, treated with 4c compound or with DMSO vehicle control for 24 hours, were labeled with anti-CD25 FITC, anti CD38-APC (BD) and analyzed by FACSCalibur cytometer (BD).
+ Open protocol
+ Expand
8

Phenotyping of BM Myeloid Cells in MM

Check if the same lab product or an alternative is used in the 5 most similar protocols
Collected 200 μl BM specimens from MM patients and HC, respectively. Subsequently, labeling the specimens with anti‐CD138‐Bv421, anti‐CD38‐APC, anti‐CSF1‐APC, anti‐CD14‐PerCP, anti‐CD68‐FITC, and anti‐CSF1R‐Bv421 antibodies was done (BD Biosciences). Among these, CD68 is an intracellular marker. The marker of intracellular staining was fixed and permeated with IntraSure Kit (BD Biosciences). Eventually, the data of CSF1 and CSF1R were acquired by flow cytometry (FCM) (Beckman CytoFLEX).
+ Open protocol
+ Expand
9

Multiparameter Flow Cytometry Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were washed with ice-cold PBS once, incubated with appropriate
fluorochrome-conjugated antibodies for 30 min at 4°C and
washed twice with ice-cold PBS containing 0.5% FCS. The following antibodies
were used: anti-CD3-PE (mouse, BD Biosciences, 555333), anti-CD5-FITC (mouse, BD
Biosciences, 555352), anti-CD14-PECy7 (mouse, ebioscience, 25–0149-42),
anti-CD19-APC (mouse, BD Biosciences, 555415), anti-CD27-PE (mouse BD
Biosciences, 555441), anti-CD38-APC (mouse, BD Biosciences, 555462),
anti-CD38-FITC (mouse, BD Biosciences, 555459). Surface protein expression was
detected by a BD FACSCalibur cell analyzer (BD Biosciences) and data were
analyzed using the FlowJo software.
+ Open protocol
+ Expand
10

Sorting and Analyzing B Cell Subsets

Check if the same lab product or an alternative is used in the 5 most similar protocols
B cells were enriched from PBMC from either individual healthy donors or two pooled healthy donors (to increase cell yield) with RosetteSep human B cell enrichment cocktail (StemCell Technologies#15064). The enriched B cells were stained as described above with 5 µl anti-CD19 BUV395, 1 µl anti-CD38 APC, 5 µl anti-CD11c BV421 (All from BD Biosciences) and 10 µl anti-CD27 BV785 (BioLegend) per 1 × 106 cells. Using a FACS Aria Fusion (BD Biosciences), CD19+CD11c B cells were sorted as naive (CD27CD38+), memory (CD27+CD38/CD38+), or plasma cells (CD27hiCD38hi). CD19+CD11c+ B cells were sorted as CD27CD38 B cells. Post sort purity was greater than 90%; B cells from five independent donors were examined. In one of the sorts insufficient cells were obtained from CD11c+ B cells and plasma cells to extract data. The RTL of sorted B cell populations were determined using Telomere PNA Kit/FITC for flow cytometry (Dako #K5327), per manufacturer’s instructions.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!