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13 protocols using ab96379

1

EGFR Signaling Pathway Protein Analysis

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Western blots were performed as we protocol described and the protein extracted and detected materials were purchase from Beyotime. The antibodies used in this study were as follows: EGFR (Proteintech, 66455-1-Ig), GLUT1 (Proteintech, 21829-1-AP), HK2 (Proteintech, 66974-1-Ig), PKM (Proteintech, 10078-2-AP), MYC (Proteintech, 10828-1-AP), LDHA (Proteintech, 19987-1-AP), GAPDH (Proteintech, 60004-1-Ig), RAF (Abcam, ab200653), MEK (Abcam, ab96379), ERK (Abcam, ab17942), phosphorylated RAF (Abcam, ab4767), phosphorylated MEK (Abcam, ab96379), and phosphorylated ERK (Abcam, ab223500). Cycloheximide (CST, #2112) was used to evaluate the protein stability of EGFR.
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2

EGFR Signaling Pathway Protein Analysis

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Western blots were performed as we protocol described and the protein extracted and detected materials were purchase from Beyotime. The antibodies used in this study were as follows: EGFR (Proteintech, 66455-1-Ig), GLUT1 (Proteintech, 21829-1-AP), HK2 (Proteintech, 66974-1-Ig), PKM (Proteintech, 10078-2-AP), MYC (Proteintech, 10828-1-AP), LDHA (Proteintech, 19987-1-AP), GAPDH (Proteintech, 60004-1-Ig), RAF (Abcam, ab200653), MEK (Abcam, ab96379), ERK (Abcam, ab17942), phosphorylated RAF (Abcam, ab4767), phosphorylated MEK (Abcam, ab96379), and phosphorylated ERK (Abcam, ab223500). Cycloheximide (CST, #2112) was used to evaluate the protein stability of EGFR.
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3

Western Blot Analysis of Protein Targets

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RIPA lysis buffer was employed to lyse cells or tumor tissues, which were then separated on SDS-PAGE gels and transferred onto the polyvinylidene fluoride (PVDF) membrane. The primary or secondary antibodies were incubated together with membranes. Antibodies of anti-WDR76 (HPA039804, Sigma-Aldrich; 1:1,000 dilution), anti-β-actin (sc-47778, Santa Cruz Biotechnology; 1:1,000 dilution), anti-Flag (A8592, Sigma-Aldrich; 1:1000 dilution), anti-HRAS (2867S, Cell Signaling Technology; 1:500 dilution), anti-p-ERK (ab229912, ABCAM; 1:500 dilution) and anti-p-MEK (ab96379, ABCAM; 1:500 dilution) were used.
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4

Ovarian Cancer Cell Protein Analysis

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Ovarian cancer cells were disrupted using cell lysis buffer (Promega) on ice for 30 min and centrifuged at 12000 rpm for 30 min. The supernatant was transferred into the new centrifuge tube, and the concentration of protein samples was detected using the BCA-200 Protein Assay kit (Pierce, Rockford, IL, USA). Protein samples were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gel and transferred to the polyvinylidene fluoride (PVDF) membrane (Millipore). The non-specific sites in the membrane were blocked using 5% skim milk for 1 h, followed by incubation with primary antibodies and horseradish peroxidase (HRP)-labeled secondary antibody. The blots were visualized using the enhanced chemiluminescent (ECL) system (Beyotime, Shanghai, China). The primary antibodies, including phosphorylated extracellular regulated MAP kinase (p-ERK; ab214036), ERK (ab17942), p-MAP kinse-ERK kinase (p-MEK; ab96379), MEK (ab178876) and GAPDH (ab181602) were purchased from Abcam (Cambridge, MA, USA).
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5

Immunohistochemical Analysis of Phosphorylated Proteins

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The paraffin-free tissue sections were treated with citrate antigen repair buffer (pH 6.0), and then the tissue sections were incubated with peroxidase blocking solution (S2023, Dako) for 15 min and blocked with protein (X0909, Dako) for 30 min. The corresponding specific primary antibodies were used: phosphor-ser221-MEK (rabbit, ab96379, Abcam), phospho-ERK1/2-Thr202/Tyr204 (rabbit, 4370, CST) and phospho-ser473-AKT (rabbit, 4060, CST). After treatment, the slides were incubated overnight at 4°C. Rabbit HRP conjugated secondary antibody (K4003, Dako) and hematoxylin (MHS32, Sigma) counterstain were used for treatment. The samples were observed with a digital microscope (Panoramic Viewer, 3D HISTECH), and protein expression was measured with a histochemical score (H-Score). Immunohistochemical results were scored with H-SCORE. The number of positive cells in each section H-SCORE = ∑ (PI × I) = (percentage of weak-strength cells × 1) + (percentage of medium-strength cells × 2) + percentage of cells. In this formula, PI represents the percentage of positive cells in the section, and I represents the staining intensity (9 –11 (link)).
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6

Protein Extraction and Western Blot Analysis

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Lysis buffer RIPA (Thermo Fisher Scientific) and N-PER (Thermo Fisher Scientific) were used to extract proteins from glioma cells and tissues, respectively. Then, 50 μg total protein per sample was separated using 12% SDS-PAGE and transferred to polyvinylidene fluoride membranes (Thermo Fisher Scientific). The membranes were probed with primary anti-IRAK3 antibody (ab8116, Abcam, MA, USA), anti-MEK1 (phospho S298) antibody [EPR3338] (ab96379), anti-ERK1 + ERK2 antibody [ERK-7D8] (ab54230), anti-c-Fos (phospho T232) antibody (ab17933), and anti-GAPDH antibody [6C5] (ab8245, Abcam) as control. The number of binding proteins was measured using AlphaEaseFC software (Genetic Technologies, FL, USA).
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7

Western Blot Analysis of Signaling Proteins

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After lysing in RIPA buffer, the collected total protein was separated on 12% SDS-PAGE and shifted onto PVDF membranes. 5% nonfat milk powder was added for blocking membranes. Next, the membrane was probed all night at 4 ​°C with primary antibodies against loading control GAPDH (ab8245, 1/1000; Abcam, Cambridge, MA, USA), TRAP (ab65854, 1/1000; Abcam), NFATc1 (ab175134, 1/1000; Abcam), TRAF3 (ab36988, 1/1000; Abcam), TRAF1 (ab129279, 1/1000; Abcam), TRADD (ab110644, 1/1000; Abcam), TRAF2 (ab230795, 1/1000; Abcam), ADAM17 (ab39162, 1/1000; Abcam), TNFRII (ab8161, 1/1000; Abcam), TNFRSF1A (ab19139, 1/1000; Abcam), p-IKB (ab133462, 1/1000; Abcam), IKB (ab32518, 1/1000; Abcam), TNFRSF11 (NB100-56508, 1/1000; Novus Biologicals, Littleton, CO, USA), p-IKKα (ab38515, 1/1000; Abcam), IKKα (ab32041, 1/1000; Abcam), p-IKKβ (ab59195, 1/1000; Abcam), IKKβ (ab124957, 1/1000; Abcam), p-Erk (ab214036, 1/1000; Abcam), Erk (ab184699, 1/10000; Abcam), p-MEK (ab96379, 1/1000; Abcam), MEK (ab32091, 1/1000; Abcam). On the following day, the HRP-secondary antibodies were added for 2 ​h at room temperature. The protein density was examined by the ECL luminous liquid (Pierce, Rockford, IL, USA). The assay was taken in triplicate.
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8

Histological and Immunohistochemical Analysis of Xenograft Tumors

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Xenograft tumours and human lung tissues were fixed in formalin, embedded in paraffin, and sectioned into 5 μm thickness after embedding. For H&E staining, the sections were double stained with haematoxylin and eosin, and histopathological changes were analysed under a light microscope.
For immunohistochemistry, the sections were blocked with 5% goat serum (ZLI-9021, ZSGB-BIO, Beijing, China) for 60 min and then incubated with the primary antibodies against IMP4 (ab181046; Abcam), ki67 (ab16667; Abcam), p-MEK1 (ab96379; Abcam), and p-ERK (ab201015; Abcam) at 4°C overnight. After incubation with HRP-conjugated secondary antibody for 60 min, the sections were stained with 3′, 3-diaminobenzidine (DAB; ZLI-9017, ZSGB-BIO). Finally, the slides were observed and photographed under a light microscope.
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9

Immunoblotting of Key Signaling Proteins

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The total proteins from lymphocytes were isolated by RIPA (Biorbyt, orb402072) protein lysate, separated by 10% SDS-PAGE gel electrophoresis, and transferred onto a membrane for 90 min. Then, the membrane was blocked at room temperature for 1 h using 1% BSA (Solarbio, PC0001), primary antibody dilutions MEK (Abcam, ab32091), ERK1/2 (Abcam, ab17942), p-MEK (Abcam, ab96379), p-ERK1 (Abcam, ab200807), p-ERK2 (Abcam, ab151549), PI3K (Abcam, ab106693), Akt (Abcam, ab2732), mTOR (Abcam, ab182651), p-Akt (Abcam, ab192623), p-mTOR (Abcam, ab137133), and β-actin (Abcam, ab8227) were subsequently added and incubated at room temperature for 2 h. After washing the membrane three times with TBST buffer, the cells were added with HRP-labeled secondary antibody (Abcam, ab205718) and incubated at room temperature for 0.5 h, then washed with TBST buffer for three times. The protein bands were developed by ECL luminescence kit (Absin, abs920) for detection.
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10

Protein Extraction and Western Blotting

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By reported procedures,18 (link) protein extraction and Western blotting were performed. The subfamily of pERK is ERK1 (pT202/pY204)+ Erk2 (pT185/pY187) (cat. no ab5001, dilution, 1:10,000; Abcam, Cambridge, MA, USA), the subfamily of ERK is ERK1+ ERK2 (cat. no ab115799, dilution 1:1,000; Abcam). The subfamily of pMEK is MEK1 (pS298) (cat. no ab96379, dilution 1:3,500; Abcam), and the subfamily of pMEK is MEK1 (cat. no ab32091, dilution 1:5,000; Abcam). β-Actin was considered as the internal control. All results were conducted in triplicate.
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