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577 protocols using silica gel

1

Fungal Extract Fractionation and Antimicrobial Screening

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By using column chromatography, 450 mg of fungal EtOAc extract of C. acutatum (from A. sinensis) was sequentially fractionated. The column was loaded with silica gel (30 g, 60–120 mesh size, Sigma-Aldrich, Japan), and endophytic fungal extract combined with 2.0 g silica powder. Hexane was used to elute the column first, followed by an increasing polarity by combination of hexane and ethyl acetate. Thin-layer chromatography (TLC) was used to verify the fractions obtained from column chromatography. Aluminum sheets coated with silica gel from Merck (Darmstadt, Germany), was used, and the spots were inspected under 254 and 366 nm UV light. The mobile phase was a mixture of chloroform, methanol, and ethyl acetate (9:3:5). The retention factor of the analyte provided an indication of its mobility (Rf). The crude was divided into four bands for this preliminary screening, and the fractions were then concentrated in a rotary evaporator, weighed, and tested for antimicrobial activity against different microbes.
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2

Purification and Characterization of Compounds

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Compounds 120 were purified by successive open column chromatography (CC) using silica gel (70–230 and 230–400 mesh, Sigma-Aldrich, Toluca, México). The isolation procedures and purity of compounds were monitored by thin layer chromatography (TLC) using precoated silica gel 60 F254 aluminium sheets, visualizing with UV-light and subsequently spraying the plates with (NH4)4Ce(SO4)4 in 2 N H2SO4 (Sigma-Aldrich, Toluca, México). All 1H-, 13C- and 2-D NMR experiments were performed in CDCl3 on a Varian Unity 400 spectrometer (Varian, Inc., Palo Alto, CA, USA) equipped with a 5 mm inverse detection pulse field gradient probe at 25 °C, at 400 MHz for 1H-NMR and 100 MHz for 13C-NMR. Chemical shifts were referenced to tetramethylsilane as an internal standard.
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3

Extraction and Purification of Ergosterol Peroxide from G. lucidum

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Crushed G. lucidum (4 kg) was extracted with ethanol (40 L) at room temperature for 7 days. The ethanol extracts (87 g) were evaporated, suspended in distilled water (2 L) and divided into two fractions (3 L each) with ethyl acetate as the non-aqueous phase. The ethyl acetate layer (70 g) was concentrated in vacuo, and its crude extracts were chromatographed on a silica gel (230–400 mesh, Merck Millipore, Darmstadt, Germany) by using a step gradient n-hexane:ethyl acetate (20:1–1:1) and chloroform:methanol (20:1–1:1) to obtain 10 fractions. The fifth and sixth fractions were combined and further separated using a silica gel (70–230-mesh, Merck Millipore, Darmstadt, Germany) column by using a step gradient chloroform:ethyl acetate (10:1–5:1) to yield four fractions. The second fraction was purified by a series of reverse phase (RP) C-18 (Merck Millipore, Darmstadt, Germany) column chromatography with acetonitrile:water (1:1–7:3) to afford ergosterol peroxide (60 mg, purity >98.0%). The structure of ergosterol peroxide was determined using spectroscopic nuclear magnetic resonance (NMR) and comparing the corresponding NMR data in literature [40 ].
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4

NMR Spectroscopic Analysis of Compounds

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1D and 2D NMR spectra were recorded in CD3OD and CDCl3 on Bruker DRX 400 instrument at 295 K. Chemical shifts are given in ppm (δ) and were referenced to the solvent signals at 3.31/49.0 and 7.24/77.0 ppm, respectively. COSY (COrrelation SpectroscopΥ), HSQC (Heteronuclear Single Quantum Correlation), HMBC (Heteronuclear Multiple Bond Correlation), and NOESY (Nuclear Overhauser Effect SpectroscopYy) (mixing time 950 ms) experiments were performed using standard Bruker microprograms. Column chromatography (CC): Sephadex LH-20 (Pharmacia) and Silica gel (Merck, Art. 9385, Darmstadt, Germany). Preparative–thin-layer chromatography (Prep-TLC) plates were pre-coated with Silica gel (Merck, Art. 5721, Darmstadt, Germany). Fractionation was always monitored by TLC Silica gel 60 F– 254 (Merck, Art. 5554, Darmstadt, Germany) with visualization under UV (254 and 366 nm) and spraying with vanillin-sulfuric acid reagent. All obtained extracts, fractions, and isolated compounds were evaporated to dryness in a vacuum under low temperature and then were put in activated desiccators with P2O5 until their weights had stabilized.
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5

Purification and Characterization of Organic Compounds

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The commercial reagents and solvents used for the organic syntheses were used as acquired (reagent grade purity) or were purified according to literature procedures [27 ]. Column chromatography (silica gel, 35–70 mesh, Merck, Darmstadt, Germany) or 20 × 20 cm preparative thin-layer chromatography (TLC) plates (coated with silica gel, 60 mesh, Merck, Darmstadt, Germany) were used to purify the reactional mixtures. 1H NMR and 13C NMR spectra were recorded on Bruker Avance 300 (300.13 MHz) and 500 (125.76 MHz) spectrometers, respectively (Bruker, Wissembourg, France). CDCl3, CD3OD, and DMSO-d6 were used as solvents, and tetramethylsilane (TMS) as an internal reference; the chemical shifts are expressed in δ (ppm) and the coupling constants (J) in Hertz (Hz). ESI-MS(+) spectra were recorded using a Micromass Q-Tof-2 spectrometer (Thermo Fisher Scientific, Manchester, UK), with CHCl3 or with a mixture of MeOH/formic acid (1%) as a solvent. High-resolution mass spectra (HRMS) were recorded on a LTQ Orbitrap XL mass spectrometer (Thermo Fisher Scientific, Bremen, Germany) using CHCl3 as a solvent. The full characterization (NMR, MS) is given in Supplementary Material.
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Spectroscopic Analysis of Organic Compounds

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Optical rotations were measured in CHCl3 or MeOH at 25 °C using a Perkin-Elmer 241 polarimeter. UV spectra were recorded on a GBC Cintra 5 spectrophotometer. NMR spectra of all isolated compounds were recorded at 25 °C on Unity Inova 500NB high-resolution spectrometer (Agilent Technologies, CA, USA) operating at 500 MHz for 1H-NMR and 100 MHz for 13 C-NMR, respectively. Spectra were measured in CDCl3 and CD3OD and referenced against residual non-deuterated solvents. HRESIMS were measured on an Agilent 6520 Time of Flight (TOF) MS instrument. Column chromatography was carried out under TLC monitoring using silica gel (40–63 µm, Merck), and Sephadex LH-20 (25–100 µm, Pharmacia). For vacuum-liquid chromatography (VLC), silica gel (40– 63 µm) (Merck) was used. TLC was performed on silica gel 60 F254 or RP-18 F254 (Merck). LiChrolut RP-18 (40–63 μm) 500 mg, 3 mL (Merck) solid phase extraction (SPE) cartridges were also used. Semi-preparative HPLC was conducted by means of a Varian 920 LH instrument fitted with an autosampler module with a 1000 µL loop. The peak purities were monitored using a dual-wavelength UV detector settled at 254 and 360 nm. The columns were a 250 × 10 mm Spherisorb silica, particle size 5 µm (Waters) and a 300 × 7.5 mm Polymeric Reversed Phase (PLRP-S 100 Å), particle size 8 µm (Varian).
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7

Rhodiola rosea Root Extraction and Fractionation

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Dried roots (10.0 kg) of R. rosea were smashed and extracted three times with 40 L of ethanol, which was filtered and rotary evaporated to give a black residue (1758 g). This residue was then suspended in H 2 O (3 L) and partitioned with an equal volume of ethyl acetate three times. The ethyl acetate layer was evaporated to dryness under vacuum (415 g). Subsequently, the dried ethyl acetate layer (250 g) was mixed with 375 g of silica gel (70-230 mesh, Merck), and was loaded onto a conditioned open column packed with 3550 g of silica gel and eluted via a stepwise gradient method by using mixtures of n-hexane, ethyl acetate, and methanol. Five hundred ml were collected for each fraction and analyzed by TLC. TLC was performed on silica gel 60 F 254 plates (Merck) by using mixtures of n-hexane-ethyl acetate for develop-ment, and spots were detected by spraying with vanillin-sulfuric acid followed by heating. Then, all fractions were combined into six portions (I-VI) according to the results of the TLC analyses; they were then redissolved in a minimum volume of the
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8

Chromatographic Separation and Anti-inflammatory Evaluation

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F-Ac (1.2 g) was selected for chromatographic separation, given its higher activity. The fraction was absorbed on silica gel (10 g, 70–230 mesh, Merck, Kenilworth, NJ, USA), placed in a glass column (50 × 300 mm2) packed with silica gel (80 g), and eluted with a dichloromethane:methanol gradient system as the mobile phase with a 10% increase in polarity, collecting fractional volumes of 100 mL. In total, 30 fractions were obtained, which were then pooled according to similarity via thin-layer chromatography (TLC) into four fractions (F1, F2, F3, and F4).
Due to the low availability of xylene and the yield of fractions, a TPA-induced local edema assay was used to evaluate the anti-inflammatory activity of F1–F4. TPA is a phorbol ester, widely used to study local inflammation by activating PKC with leukocyte infiltration and promoting eicosanoid release [45 ].
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9

Spectroscopic Characterization of Compounds

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The following instructions were used to obtain spectroscopic data: melting points, Yanagimoto micromelting point apparatus (Yanaco New Science Inc., Kyoto, Japan); optical rotations, JASCO DIP-1000 digital polarimeter (JASCO Co., Tokyo, Japan); IR spectra, PerkineElmer 1720X FTIR spectrophotometer (PerkineElmer Inc., Waltham, MA, USA); UV spectra, HITACHI U-2000 spectrometer (Hitachi High-Technologies Co., Tokyo, Japan) (acetonitrile as a solvent); 1H and 13C NMR spectra, Agilent VNMRS 600 spectrometer (Agilent Technologies Inc., Santa Clara, CA, USA) (CDCl3 was used as the solvent and TMS as the internal standard); FABMS, JEOL JMS-7000 mass spectrometer (JEOL Ltd., Tokyo, Japan); CD spectra, JASCO J-820 spectrometer (JASCO Co.); and HPLC, JASCO PU-1586 (RI 1531) (JASCO Co.). The following experimental conditions were used for column chromatography: (silica gel, 70–230 mesh; Merck, Darmstadt, Germany); medium-pressure liquid chromatography (MPLC; silica gel, 230–400 mesh; Merck); and TLC (silica gel 60 F254; Merck).
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10

Comprehensive NMR and Mass Spectrometry Analysis

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The 1D and 2D NMR spectra were obtained using a Bruker Avance DRX Spectrometer, and the chemical shifts were recorded as δ values (ppm). Mass spectra were recorded using a high-resolution ESI Mass spectrometer. Silica gel (Merck, 63–200 μm particle size) and RP-18 (Merck, 75 μm particle size) were used for column chromatography. TLC was performed using Merck silicagel 60 F254 and RP-18 F254 plates. Isolated compounds were visualized after spraying with aqueous 20% H2SO4 and heating for about 5 min. Analytical-grade acetonitrile and distilled HPLC-grade water were purchased from Fisher Scientific (Pittsburgh, PA, USA). Open column chromatography was conducted using Silica gel (Merck, Darmstadt, Germany) and Sephadex LH-20 (Pharmacia, Uppsala, Sweden).
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