Lung tissue, control or infiltrated by tumors, were harvested after PBS lung circulatory perfusion. The whole tissue was mechanically cut into small pieces and digested with
Collagenase type 2 (265 U/mL; Worthington) and
DNase (250 U/mL; Thermo scientific) at 37 °C for 30’.
Collagenase was then stopped by EDTA 10 mM and the cell suspension was filtered using
70 μm cell strainer (Corning).
CD11c
+ lung cells were separated by immunomagnetic sorting using
CD11c microbeads (Miltenyi Biotec) following manufacturer’s instructions. Dendritic cells were purified by FACS sorting with
FACS Aria II (BD Biosciences), using the gating strategy shown in Supplementary Fig.
1c, after CD11c
+ cells staining in PBS + 2% FBS with the following antibodies: CD11c-A647 (N418), CD103-PE (2E7) purchased from Biolegend and SiglecF-BB515 (E50-2440), CD11b-BV421 (M1/70) and MHCII-BV711 (M5/114.15.2) from BD Biosciences. For gene expression analysis up to 30,000 cells were sorted directly into 350 μL
RLT buffer (Qiagen). For ex-vivo stimulation, 10,000 cDC1 were plated in U-bottom 96-well, stimulated with
CpGB (1 µg/mL, Invivogen) or
DMXAA (25 µg/mL, Invivogen) for 3 h and then lysed in
RLT buffer for gene expression analysis.
Caronni N., Piperno G.M., Simoncello F., Romano O., Vodret S., Yanagihashi Y., Dress R., Dutertre C.A., Bugatti M., Bourdeley P., Del Prete A., Schioppa T., Mazza E.M., Collavin L., Zacchigna S., Ostuni R., Guermonprez P., Vermi W., Ginhoux F., Bicciato S., Nagata S, & Benvenuti F. (2021). TIM4 expression by dendritic cells mediates uptake of tumor-associated antigens and anti-tumor responses. Nature Communications, 12, 2237.