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25 protocols using mitotracker red

1

Mitochondrial Fluorescent Labeling

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MitoTracker-Red (Cell Signaling Technology, 9082) was used for fluorescence staining of mitochondria, according to the manufacturer’s instructions [7 (link), 20 (link), 21 (link)]. Mito-PA-GFP lentivirus (green fluorescent protein targeting mitochondrial matrix) was used for fluorescent labeling of mitochondria in HCC cell culture [22 (link)].
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2

Mitochondrial Activity and PPARγ Expression

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PC3 cells were treated with 500nM Mitotracker Red (Cell Signaling Technology) for 45 minutes prior to fixation. Both PC3 and LCP cells were fixed in 2% paraformaldehyde in PBS and permeablized in 0.1% triton X in PBS. Cells were blocked for 60 min at RT with 10% normal goat serum in PBS. Anti- PPARγ (Cell Signaling Technologies) was added overnight at 4C, followed by washing and treatment with an Alexafluor-488 (PC3) or Alexafluor-647 (LCP) labeled, goat-anti-rabbit secondary antibody for 60 min. Cells were washed and mounted and pictures were taken with the aid of a CCD-camera attached to a fluorescent microscope.
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Visualizing Mitochondrial Dynamics in HepG2 Cells

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HepG2 cells were loaded with MitoTracker Red (500 nM, Cell Signaling Technology, USA) to label the mitochondria as described [29 (link)]. Briefly, after treated as indicated, the HepG2 cells were loaded with MitoTracker Red and imaged by laser confocal scanning microscopy (Zeiss, Germany) under the excitation (Ex) and emission (Em) wavelength of 644 nm and 665 nm, respectively. To observe the mitochondrial fusion, HepG2 cells were labeled with MitoTracker Red and then fixed with 4% paraformaldehyde (Beyotime, China), permeabilized with 0.25% Triton X-100 (Beyotime, China) and blocked with 5% goat serum (Beyotime, China). Then, cells were incubated with primary antibody against OPA1 at 4 °C overnight and incubated with Alexa Fluor® 488 goat anti-rabbit IgG secondary antibody (1:200, Beyotime, China). Finally, nuclei were counterstained with DAPI. Samples were analyzed using laser confocal scanning microscopy (Zeiss, Germany).
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Immunofluorescence Staining of Adipocytes

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For immunofluorescence studies, adipocytes were cultured on 12 × 12 mm poly-L-lysine pretreated slides and then fixed in methanol, followed by rinsing with PBS. The fixed adipocytes were blocked with 1% Bovine serum albumin (BSA) in TBST for an hour and incubated with polyclonal anti-UCP1 antibody (1:500 dilution) overnight at 4°C, followed by three rinses. After that, adipocytes were treated with Fluorescein isothiocyanate (FITC)-conjugated secondary antibody (1:500 dilution) in blocking solution. To stain mitochondria, MitoTracker Red (1 mM; Cell Signaling Technology) was used according to the manufacturer's protocol. Then, the cells were fixed, washed once with PBS, and then immunostained. The nuclei of the fixed cells were stained by using Hoechst. Finally, slides were mounted with ProLong Gold Antifade reagent (Life Technologies), and imaging data were obtained by using a Zeiss confocal laser scanning microscope LSM880 (Carl Zeiss, Oberkochen, Germany) combined with Zeiss microscope software ZEN 2012 (Carl Zeiss) and ImageJ software.
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5

Immunostaining and Mitochondrial Imaging

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Cells grown on poly-L-lysine-pretreated coverslips were fixed with 4% p-formaldehyde followed by washing with phosphate-buffered saline (PBS) and then subjected to permeabilization with 0.25% Triton X100 (Sigma-Aldrich, MO, USA). Cells were washed with PBS three times, blocked with 1% Bovine Serum Albumin (BSA) in PBS-T for 1 h, and incubated with polyclonal anti-UCP1 antibody (1:200 dilution) (Santa Cruz Biotechnology, Santa Cruz, CA, USA) overnight at 4°C, followed by three washes with PBS. Cells were then incubated with fluoresceine isothiocyanate (FITC)-conjugated antigoat secondary antibody (1:400 dilutions). 4,6-diamino-2-phenyl indole (DAPI) (Thermo Fisher Scientific, Boston, MA, USA) was used to stain nuclei of cells. Florescence images were captured using a confocal laser scanning microscope LSM700 (Carl Zeiss, Oberkochen, Germany). Analysis of images (control and curcumin-treated) was performed by software Zen 2009 (Carl Zeiss, Germany). For staining of mitochondria, Mito Tracker Red (1 mM, Cell Signaling Technology, Beverly, MA) was directly added to the growing media at a concentration of 20–25 nM, and cells were kept for 30–40 min at 37°C. After incubation, cells were fixed in 4% p-formaldehyde, followed by a single wash with PBS and immunostaining (4 (link)).
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6

Mitochondrial Dynamics and Autophagy in HUVECs

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HUVECs (5 × 104cells/cm2) were cultured in a confocal dish for 24 h and then treated with various interventions. Subsequently, the treated HUVECs were stained with MitoTracker Red (Cell Signaling Technology, # 8778S, USA) for 30 min at 37 ℃ and fixed with cold methanol for 15 min at – 20 ℃. After undergoing 3 washes with PBS, they were permeabilized in Triton X-100 (Sigma-Aldrich, # T8787, USA) and blocked with 1%BSA, 10% goat-serum, and 0.3% glycine for 1 h at RT. Then, the cells were incubated with the primary antibody against LC3 (1:200) (Cell Signaling Technology, #4108S, USA) at 4 ℃ overnight. Subsequently, they were incubated with the related secondary antibody. Confocal images were captured with Leica SP5 confocal microscope (Leica, Germany) and analyzed by Fiji ImageJ software.
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7

Immunofluorescence Imaging of Microbeam-Irradiated Cells

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After microbeam irradiation, cells were washed twice with cold PBS at indicated time points, fixed with 4% paraformaldehyde in PBS for 20 min at room temperature, and subsequently washed twice with PBS. Cells were permeabilized with 0.2% Triton X-100 in PBS for 15 min, washed twice with PBS, and stained with specific antibodies, in combination with Alexa Fluor 488 goat anti-rabbit IgG secondary antibody. MitoTracker Red (Cell Signaling) was used to label mitochondria in live cells, as described in the manufacturer’s protocol. DAPI was used to visualize nuclei and fluorescent images were captured using a Nikon confocal microscope.
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8

Histological and Immunofluorescence Analysis of Adipose Tissue

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After euthanasia, sWAT and visceral WAT (vWAT) were rapidly collected and fixed in 4% paraformaldehyde solution for 48 h. The tissues were then paraffin-embedded and the resulting blocks were cut into 5–10 µm sections and stained with hematoxylin and eosin (H&E) to assess adipose histology. Photomicrographs were obtained using a Nikon Eclipse E600 microscope (Nikon Corporation, Tokyo, Japan).
For immunofluorescence analysis, fixed cells and WAT sections were stained with rabbit anti-UCP1 (dilution, 1:200) or anti-CPT1 (dilution, 1:1000) antibodies overnight at 4 °C in a moist chamber. Fluorescein isothiocyanate (FITC)-conjugated (dilution, 1:1000) and Alexa Fluor™ 594-conjugated (dilution, 1:1000) secondary antibodies were used. Mitochondria were identified by staining with 1 mM MitoTracker Red (Cell Signaling Technology, Danvers, MA, USA), according to the manufacturer’s protocol, and nuclei were stained using DAPI (Thermo Fisher Scientific, Waltham, MA, USA) fluorescence. After mounting using ProLong Gold Antifade reagent (Thermo Fisher Scientific), fluorescence images were captured using a Zeiss confocal laser scanning microscope (LSM880; Carl Zeiss, Oberkochen, Germany) and Zen 2012 software (Carl Zeiss).
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9

Fluorescent Imaging of Organelles in Differentiating Cells

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Starting on day 9 of differentiation, progenitors were plated on 4-chambered live-cell imaging dishes (D35C4-20-1-N Cellvis) that were triple coated (PLO/laminin/fibronectin). Cells were maintained as previously described. Cells were treated as previously described. Cells were loaded with LysoSensor DND-189 (L7535 Molecular Probes) or Fluo-4 (F14201 Invitrogen) at 1 μM for 30 min or MitoTracker red (M22425 Cell Signaling) at 100 nM for 45 min at 37°C. Cells were then washed once with PBS and the media was replaced with imaging media (complete 3M without phenol red). Cells loaded with Fluo-4 were incubated at room temperature for 20 min before imaging. Samples were imaged immediately in a temperature-controlled chamber attached to a Zeiss LSM800 Airyscan confocal microscope. Images were taken at ×20 (Fluo-4) or ×63 (LysoSensor and MitoTracker) magnification. Image analysis was performed in ImageJ using custom macro scripts.
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10

Mitochondrial Dynamics Analysis in B2B Cells

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The changes in mitochondrial dynamics were detected by using MitoTracker Red CMXRos in B2B cells. After treatment with PQ or OAA for 48 h, cells were incubated with 100 nM MitoTracker Red (#9082, Cell Signaling Technology) for 30 min at 37°C. Then, cells were fixed with 4% paraformaldehyde for 10 min at −20°C and the nuclei were stained with DAPI (Beyotim Biotechnology), Finally, subsequent images were obtained by fluorescence microscope.
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