The largest database of trusted experimental protocols

7 protocols using ab177149

1

Western Blot Analysis of Protein Targets

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed in 2× Laemmli sample buffer and were boiled for 5 min. Protein size-fractionation by a 6% SDS–PAGE gel and subsequent electro-transfer to a PVDF membrane (0.45 μm) was accomplished as described (36 (link)). Blotting was performed overnight at 4°C, 75 mA in 2× Blot-buffer (50 mM Tris, 384 mM Glycin, 0.02% SDS) without methanol. Blocking of the membranes was accomplished with 3% BSA in PBS for 1 h at room temperature. Membranes were then washed three times with PBS containing 0.05% Tween and were subsequently incubated with primary antibodies against CSB (E-18, sc-10459, Santa Cruz Biotechnology, Inc., 1:250 in PBS 3% BSA), Tubulin (B512, Sigma-Aldrich, 1:5000 in PBS 3% BSA), or OGG1 (ab12474, Abcam, 1:1000 in PBS 3% BSA) or SFPQ (ab177149, Abcam, 1:2000 in PBS 3% BSA) in combination with Odyssey-compatible secondary antibodies. Western blots were analyzed using the Odyssey CLx Infrared Imaging System (LI-COR Biosciences).
+ Open protocol
+ Expand
2

Quantifying NEAT1 and SFPQ Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
RT-qPCR of NEAT1_2 and SFPQ mRNA in tissue specimens or cell lines were performed using a custom-made RT-qPCR kit (GeneCopoeia, Maryland, USA), following the manufacturer’s instructions. The semi-quantitative 2−ΔΔCt method was employed for qPCR data analysis, and expression levels of NEAT1_1, NEAT1_2 or SFPQ mRNA in each sample were normalized to that of GAPDH mRNA before further analysis. Western blotting of SFPQ in different cell cultures was performed using a rabbit anti-human SFPQ monoclonal antibody (ab177149), rabbit anti-human GAPDH monoclonal antibody (ab128915) and horseradish peroxidase-conjugated goat anti-rabbit second antibody (ab205718, Abcam, Cambridge, UK), following the manufacturer’s instructions. Western blotting results were further analyzed by normalizing the gray scale of the SFPQ band in each sample to that of GAPDH using ImageJ software before statistical analysis.
+ Open protocol
+ Expand
3

Immunodetection of FUS and Related Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following commercial primary antibodies were used: FUS full protein (rabbit polyclonal, 11,570–1-AP); FUS N-terminus (rabbit polyclonal, Abcam, ab84078; aa. 1–50); FUS C-terminus (Bethyl, A300-294A; aa. 500–526); p54nrb/NONO (rabbit polyclonal C-terminal, Sigma); SFPQ (rabbit monoclonal, ab177149, Abcam; rabbit polyclonal, A301-322A, Bethyl); beta-actin (mouse monoclonal, A5441, Sigma). Antibodies were used at 1:500–1:1000 dilution for all applications unless stated otherwise.
+ Open protocol
+ Expand
4

Comprehensive Antibody Panel for Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following commercial primary antibodies were used: G3BP1 (mouse monoclonal; BD Biosciences); TIAR (mouse monoclonal; BD Biosciences); NONO (rabbit polyclonal C-terminal; Sigma-Aldrich); SFPQ (rabbit monoclonal; ab177149, Abcam); CPSF6 (rabbit polyclonal; A301-356A, Bethyl); FUS (mouse monoclonal; 4H11, Santa Cruz); ELAVL1 (rabbit polyclonal, 11910-1-AP, Proteintech); PABPC1 (rabbit polyclonal, Cell Signaling, 4992); EIF4E (mouse monoclonal; BD Biosciences); UBAP2L (rabbit polyclonal; A300-533A, Bethyl); DAZAP1 (rabbit polyclonal; A303-984A, Bethyl); hnRNP K (rabbit polyclonal; A300-674A, Bethyl); PSPC1 (rabbit polyclonal N-terminal; Sigma-Aldrich); TDP-43 (rabbit polyclonal C-terminal; Sigma-Aldrich); HNRNPA3 (rabbit polyclonal; 25142-1-AP, Proteintech); RBM12B (rabbit polyclonal; 17137-1-AP, Proteintech); SRSF9 (rabbit polyclonal; 17926-1-AP, Proteintech); SMARCA5 (rabbit polyclonal; 13066-1-AP, Proteintech); MATR3 (rabbit polyclonal; 12202-2-AP, Proteintech); YBX1 (rabbit polyclonal; 20339-1-AP, Proteintech); GFP (mouse monoclonal; sc-9996, Santa Cruz); Flag (DYKDDDDK tag, mouse monoclonal; 9A3, Cell Signaling); eIF2α phosphorylated at Ser51 (rabbit monoclonal; ab32157, Abcam); total eIF2α (rabbit monoclonal; D7D3, Cell Signaling); and β-actin (mouse monoclonal; A5441, Sigma-Aldrich). Antibodies were used at 1:1,000 dilution for all applications unless stated otherwise.
+ Open protocol
+ Expand
5

Antibody Panel for Neurodegeneration Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following commercial primary antibodies were used: TDP-43 (rabbit polyclonal, 10782–2-AP, Proteintech and mouse monoclonal, MAB7778-SP, R&D Biosystems); FUS (rabbit polyclonal, Proteintech, 11570–1-AP); p54nrb/NONO (rabbit polyclonal C-terminal, Sigma); PSF/SFPQ (rabbit monoclonal, ab177149, Abcam); Tuj (β-Tubulin III, mouse monoclonal, Sigma); dsRNA (mouse monoclonal, J2, Kerafast); cleaved caspase 3 (rabbit polyclonal, 9661, Cell Signaling); NF-κB p65 (rabbit monoclonal, D14E12, Cell Signaling); IFIT3 (rabbit polyclonal, Bethyl); p-eIF2α (rabbit monoclonal, ab32157, Abcam); p-PKR (rabbit polyclonal, Thr451, ThermoFisher); PKR (mouse monoclonal, MAB1980-SP, R&D Systems); eIF2α (rabbit monoclonal, D7D3, Cell Signaling); β-actin (mouse monoclonal, A5441, Sigma). Antibodies were used at 1:500–1:1000 dilution for all applications.
+ Open protocol
+ Expand
6

Protein Extraction and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total cell lysates were prepared for western blot by adding 2× Laemmli buffer directly to the wells in a 24-well plate followed by denaturation at 100°C for 5 min. SDS-PAGE and detection of proteins were carried out as described elsewhere (26 (link)). The following commercial primary antibodies were used (1:1000 dilution): FUS (rabbit polyclonal, 11570-1-AP, Proteintech); NONO (rabbit polyclonal C-terminal, Sigma); SFPQ (rabbit monoclonal, ab177149, Abcam); beta-actin (mouse monoclonal, A5441, Sigma).
+ Open protocol
+ Expand
7

Western Blot Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Equal amounts of protein were subjected to SDS-PAGE and transferred to PVDF membranes (Millipore, Bedford, MA, USA). The membranes were incubated with primary antibodies, including rabbit anti-ILF3 (1:2000, ab93255, Abcam), rabbit anti-SFPQ (1:2000, ab133574, Abcam), rabbit anti-NONO (1:2000, ab177149, Abcam), rabbit anti-GAPDH (1:5000, 5174, Cell Signaling Technology), rabbit anti-H3 (1:5000, 9728, Cell Signaling Technology), rabbit anti-SOCS2 (1:2000, ab109245, Abcam), rabbit anti-pJAK2 (1:2000, ab32101, Abcam), rabbit anti-JAK2 (1:2000, ab108596, Abcam), rabbit anti-pSTAT5 (1:2000, ab32364, Abcam), rabbit anti-STAT5 (1:2000, ab200341, Abcam), rabbit anti-pSTAT3 (1:2000, ab76315, Abcam), rabbit anti-STAT3 (1:2000, ab68153, Abcam). HRP-linked secondary antibody was used as the secondary antibody. Signals were visualized with chemiluminescence (Millipore, MA, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!