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Ta cloning vector pmd18 t

Manufactured by Takara Bio
Sourced in Japan, China

The TA cloning vector pMD18-T is a plasmid designed for the direct cloning of PCR products. It contains a T-overhang at the insertion site, allowing for the direct ligation of Taq polymerase-amplified DNA fragments without the need for prior enzymatic modification.

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5 protocols using ta cloning vector pmd18 t

1

Isolation and Characterization of Anthurium MYB and bHLH Transcription Factors

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One MYB unigene and one bHLH unigene were selected from the mixed floral and foliar transcriptome database of anthurium29 (link), which were annotated as AtTT2-like and AtTT8-like transcription factors, respectively. The unigenes were designated as AaMYB3 (GenBank accession no. MH349476) and AabHLH1 (accession no. MH349477). The full-length cDNA of AaMYB3 and AabHLH1 was isolated from the “Tropical” spathe with reverse transcription (RT)-PCR using primers designed according to the transcriptome data: forward 5′-ATGGGCAGGAGACCCTGTT-3′, reverse 5′-CGCCATTACTTCACCCATTC-3′ for AaMYB3, and forward 5′-AGGAGGGGTAGTTGAGCAGGT-3′, reverse 5′-TCATGCTCTAAGCATGTCACGA-3′ for AabHLH1. PCR-amplified products were cloned into the T/A cloning vector pMD18-T (TaKaRa, Dalian, China) and sequenced. The full length of the amino acid sequences deduced for AaMYB3 and AabHLH1 were constructed using the ClustalX2 and the MEGA 5.05 programs (the Neighbor-Joining method with 1000 bootstrap replications) for sequence alignment and phylogenetic analysis, respectively.
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2

Cloning and Sequencing of PCR Products

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Gel Extraction Mini Kit (Omega, USA) was used for DNA purification and recovery of the PCR products. Purified PCR products ligated with a TA cloning vector pMD18-T (TaKaRa, Japan) were transformed into competent E. coli cells strain JM109 (Beijing TransGen Biotech, PRC). Confirmation of clones containing recombinant plasmid was achieved by PCR and restriction enzyme digestion. The PCR conditions were the same as that for the above-mentioned PCR amplification. Three positive clones were randomly selected and cultured. Recombinant plasmids were sequenced at Shanghai Sang-gong Biological Engineering Technology & Services Co., Ltd (Shanghai, China).
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3

Microbial Strain Cultivation and Characterization

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E. coli DH5α, S. aureus, Rhizoctonia. solani Khün (rice)-10 and Sclerotinia. sclerotiorum (Lib.) de Bary-14., were obtained from the state key laboratory of agricultural microbiology of Huazhong Agricultural University, Wuhan-China. E. coli BL21 (DE3) and expression plasmid pET32a were purchased from Novagen (Piscataway, NJ, USA). TA cloning vector pMD18-T, T4 DNA ligase, and Taq DNA polymerase were purchased from TaKaRa Biotechnology (TaKaRa, Japan). AxyPrep DNA Gel Extraction Kit is the product of Axygen Scientific Inc (USA). TRIzol reagent and TransScriptIII first-Strand cDNA Synthesis SuperMix were obtained from Invitrogen (USA).
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4

Gel Electrophoresis and Cloning

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5 µlitr of the PCR products were used in electrophoresis in a 1.5% agarose gel in a TBE buffer stained with ethidium bromide. The DNA was visualized under a UV light. Bands corresponding to the largest products were excised from the agarose gels, purified with Agarose Gel DNA Recovery Kit (TaKaRa, China), and cloned into a pMD18-T TA cloning vector (TaKaRa, China), and then sequenced with M13 forward or reverse primers.
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5

Bisulfite Sequencing Protocol with Cloning

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Bisulfite sequencing was performed using the EZ DNA methylation kit (Zymo Research, Irvine, CA, USA) following the manufacturer’s manual. The PCR products were cloned into pMD18T TA cloning vector (Takara, Tokyo, Japan), and individual clones were then sequenced for subsequent analysis. Primers used in this study are listed in Supplementary Table 1.
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