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Alexa 488 for green

Manufactured by Thermo Fisher Scientific
Sourced in United States

Alexa Fluor 488 is a green fluorescent dye commonly used in fluorescence microscopy and flow cytometry applications. It has an excitation maximum at 495 nm and an emission maximum at 519 nm. Alexa Fluor 488 is a bright, photostable dye with a high quantum yield, making it suitable for various labeling and detection techniques.

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5 protocols using alexa 488 for green

1

Immunofluorescence Imaging of Podocytes

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Human podocytes that were grown on type I collagen-coated glass cover slips were incubated at 37℃ for 2 h and fixed in 4% paraformaldehyde for 20 min. The cells were then permeabilized in 0.1% tritonX-100 for 10 min, blocked with 10% FBS for 30 min, washed three times for 5 min in phosphate buffered saline (PBS), and labeled with monoclonal rabbit anti-ZO-1 antibody (Invitrogen, Eugene, OR, USA). Phalloidin-FITC (Sigma-Aldrich Inc.) was utilized to stain F-actin. Primary antibody-bound specimens were incubated with 1:1000 (v/v) Alexa 594 for red conjugates and Alexa 488 for green (Invitrogen), respective of secondary anti-rabbit IgG, at room temperature for 40 min and at 37℃ for 20 min without CO2. Nuclei were stained with 4'-6-diamidino-2-phenylindole (DAPI) (1:1000) for 20 min in PBS. Coverslips were mounted in aqueous mountant and viewed with a fluorescence microscope (Leica TCS SP2 AOBS, Mannheim, Germany).
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2

Histological Analysis of Vascular Grafts

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The vascular grafts were explanted and fixed in 4% paraformaldehyde at 4°C. Cross sections in the middle portion of the graft (10 μm in thickness; 5–7 mm from the proximal end of the graft) were cryosectioned for H&E staining and immunostaining. The frozen sections (10 μm in thickness) of vascular grafts were incubated in 5% normal goat serum for 30 minutes to block the non-specific binding, and then incubated with primary antibody diluted in 5% normal goat serum overnight at 4°C. Negative controls were included by omitting the primary antibody. The sections were incubated for one hour with either horseradish peroxidase-conjugated anti-mouse or rabbit IgG (1:1000, Alexa 594 for red and Alexa 488 for green, Invitrogen, Carlsbad, CA). Finally, slides were mounted and examined by using a fluorescence microscope (Zeiss Axioskop 2 MOT). For immunohistochemical staining, the sections were incubated with biotin-conjugated secondary antibody and avidin-biotin enzyme reagent for 1 h. A hematoxylin and eosin (H&E) counterstaining was performed. For H&E staining, sections were deparaffinized first in three changes of 100% xylene for 5 minutes each, then hydrated through graded alcohol (100%, 95% and 70%; 5 min each), and rinsed in phosphate-buffered saline, followed by standard H&E staining.
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3

Immunofluorescence Analysis of Phospho-AMPKα1/2

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Podocytes that were grown on type I collagen-coated glass coverslips incubated for 24 hours were fixed in 4% paraformaldehyde, permeabilized in phosphate buffer solution, blocked with 10% normal goat serum, and labeled with monoclonal rabbit antiphospho-AMPKα1⧸2 (Thr172) (Cell Signaling). F-actin was visualized with TRITC-phalloidin (Sigma Chemical Co.). Primary antibody-bound specimens were incubated with 1:500 (v/v) Alexa 488 for green and Alexa 594 for red (Invitrogen, Eugene, OR, USA) conjugated secondary antibodies at room temperature for 1 hour. Coverslips were mounted in an aqueous mounting medium and viewed with a fluorescence microscope (BX51; Olympus, Tokyo, Japan).The fluorescence intensities were evaluated and calculated using the public domain image-processing program IMAGEJ 1.46r (National Institutes of Health, Bethesda, MD, USA).
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4

Immunofluorescence Localization of Podocyte Cytoskeletal Proteins

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Podocytes that were grown on type I collagen-coated glass cover slips incubated for 24 hours were fixed in 4% paraformaldehyde, permeabilized in phosphate buffer solution, blocked with 10% normal goat serum, and labeled with polyclonal rabbit anti-rat p130Cas antibody (Santa Cruz Biotechnology, Santa Cruz, CA, USA) or polyclonal anti-rat FAK antibody (Santa Cruz Biotechnology). Primary antibody-bound specimens were incubated with 1:500 (v/v) Alexa 488 for green and Alexa 594 for red (Invitrogen, Eugene, OR, USA)-conjugated respective secondary antibodies at room temperature for 1 hour. F-actin was visualized with TRITC-phalloidin (Sigma Chemical Co., Saint Louis, MO, USA) and nuclei were stained with 2 mM 4, 6-diamidino-2-phenylindole dihydrochloride (DAPI, Sigma Chemical). Coverslips were mounted in aqueous mountant and viewed with a Fluorescence microscope (BX51, OLYMPUS, Tokyo, Japan).
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5

Immunofluorescence Analysis of Podocyte Proteins

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Podocytes grown on type I collagen-coated glass cover slips incubated for 24 hours were fixed with 4% paraformaldehyde, permeabilized in 0.3% Triton X-100 for 10 minutes at RT, blocked with 10% normal goat serum, and labeled with monoclonal rabbit anti-ATF6α (Cell Signaling Technology) and anti-CD2AP (Santa Cruz Biotechnology) antibodies. Primary antibody-bound specimens were incubated with 1:500 (v/v) Alexa 488 for green and Alexa 594 for red (Invitrogen) conjugated secondary antibodies at RT for 1 hour. DAPI was used to stain nuclei. The coverslips were mounted in aqueous mounting medium and visualized under a fluorescence microscope (BX51; Olympus, Tokyo, Japan).
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