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11 protocols using n n dimethylaniline

1

Enzymatic Assays for Polyamines

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Guazatine, N,N′-dimethylthiourea (DMTU), nitroblue tetra zolium (NBT), 3, 3-diaminobenzidine hydrochloride (DAB), 3,3,5,5-tetramethylbenzidine (TMB), Spm, Spd, Put, 4-amino antipyrine, N,N′-dimethylaniline, and horseradish peroxidase were purchased from Sigma-Aldrich. Water used was always doubly distilled.
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2

Synthesis and Characterization of Castor Oil-Based Polymers

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Castor oil (B.P. grade) was purchased from a local pharmacy (Dischem, Cape Town, South Africa). Isobornyl methacrylate (IBOMA, technical grade, stabilized with 150 ppm monomethyl ether hydroquinone), styrene (≥99%, stabilized with 4-tert-butylcatechol), glycerol (98%), Ca(OH)2 (≥95%), maleic anhydride (MA, 99%), sodium hydrogen carbonate (NaHCO3, 99.7%), sodium hydroxide (99.5%), hydroquinone (98%), N,N-dimethylaniline (N,N-DMA, ≥99%), N,N-dimethylbenzylamine (N,N-DMBA, ≥99%), dibenzoyl peroxide (BPO, Luperox A75), surfactant (Ewopal 80), diethyl ether (99%), toluene (99.5%) were purchased from Sigma Aldrich (Modderfontein, South Africa). Oxalic acid, sodium hydroxide, ethanol (99.6%), and anhydrous MgSO4 were supplied by Kimix Chemicals, Cape Town, South Africa. styrene contained 4-tert-butylcatechol stabilizer, which was removed by washing with 2M NaOH twice, followed by sequential washing with distilled water and a 4 wt% NaCl aqueous solution. The product was then dried over anhydrous MgSO4 and filtered. All other materials were used as received.
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3

HPLC Analysis of Diverse Organic Solutes

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The test solutes used in this study were obtained from various suppliers. Toluene, propylbenzene, butylbenzene, biphenyl, phenol, benzoic acid, aniline, N,N-dimethylaniline, caffeine, o-cresol, p-cresol, m-cresol, phloroglucinol, bromobenzene, chlorobenzene, nitrobenzene, anisole, naphthoic acid, acetophenone, 2,4-dimethylphenol, 2,6-dimethylphenol, p-nitrophenol, o-nitrophenol, m-nitrophenol, uracil, naproxen, ibuprofen, nifedipine, and bupropion were acquired from Sigma–Aldrich. Benzaldehyde, naphthalene, and benzyl alcohol were purchased from Thermo Fisher Scientific. All chemicals were used as received without any further purification. Individual samples were prepared in methanol (Thermo Fisher Scientific) as the solvent at a concentration of 10−2 mM; the mixture containing the various components was prepared in methanol at a concentration of 2 mM each. Samples were filtered through a 0.45 μm membrane filter before injection into the chromatograph. HPLC-grade methanol from Thermo Fisher Scientific was used as the mobile phase modifier. Food-grade CO2 was purchased from PRAXAIR and used as the mobile phase.
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4

Glycosylation Analysis of Proteins

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Antigen retrieval buffer was
purchased from R&D Systems. Peptide-N-Glycosidase F (PNGase F)
was from New England Biolabs, dithiothreitol (DTT), maltoheptaose
(DP7), 2,5-dihydroxybenzoic acid (DHB), and N,N-Dimethylaniline
(DMA) were purchased from Sigma-Aldrich. Biotinylated AAL and ConA
lectins and the ABC-Elite kit were from Vector Laboratories. Peroxidase
blocking reagent was from Dako.
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5

Phage DNA Hydrolysis and Carbohydrate Analysis

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Hydrolysis reactions were performed using 15 µg of phage DNA diluted to 300 µL in water. An equal volume of 4 M trifluoroacetic acid (TFA) was added and the mixture heated at 100 °C in a heating block for three hours. The samples were cooled to room temperature, lyophilized, and then reconstituted in water (60 µL). The samples were subjected to high-pH anion exchange chromatography with pulsed amperometric detection (HPAED-PAD) analysis in duplicate by injecting a 10-µL sample volume. Standards were also analyzed for identification and quantitation (the signal from 1.0 nmol of glucose gave a peak area of 20.0 and therefore a response of 0.05 nmol/area). Dionex analysis was carried out on an ICS5000 instrument using a Carbopac™ PA10 (4 × 250 mM) (Sunnyvale, CA, USA) analytical column. Samples were eluted using an isocratic 18 mM NaOH solution.
Matrix assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) analysis was performed on a Bruker UltrafleXtreme MALDI-TOF/TOF mass spectrometer (Sunnyvale, CA, USA)in positive reflector mode. Thus, 100 mg/mL of 2,5-dihydroxybenzoic acid (Sigma-Aldrich, St. Louis, MO, USA) matrix was prepared in 1:1 H2O/acetonitrile solution, with additional 20 μL of N,N-dimethylaniline (Sigma-Aldrich).
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6

Aromatic Amine Monitoring via GC-FID

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In order to monitor the volatile intermediates and by-products (mainly, the most concerning aromatic amines), the samples were injected in a Shimadzu GC-2010 gas chromatograph provided with flame ionization detector (FID) and split injection mode; 5.0 mL of sample were analyzed in this case. Three successive extractions were conducted with 3.0 mL portions of ethyl acetate (Panreac, 99.5%); the sample was concentrated in a Heidolph rotaevaporator at 40°C up to 2.0 mL, and then measured. Separations were made under a temperature program by using an PTA-5 Fused Silica capillary column (30 m × 0.53 mm × 1.5 μm from SUPELCO). The GC conditions of separation were: Detector and injector temperature: 220°C, carrier gas He, make up gas N2 (40 mL/min), oven temperature program: 130–150°C under a ramp of 1.0°C/min, then 150–180°C under a ramp of 10°C/min, and finally 1 min at 180°C. Following standards were used to calculate response factors: Phenylamine (Mallinckrodt, 99.99%), N-methylaniline (Sigma-Aldrich, ≥99%), N,N-dimethylaniline (Sigma-Aldrich, 99.57%), N,N-dimethyl-p-phenylenediamine (Alfa Aesar, 96%), 3-Dimethylaminophenol (Alfa Aesar, 97%).
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7

Purification and Quantification of Bovine Serum Amine Oxidase

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All reagents were purchased at the highest commercially available purity and were used without further purification processes. Bovine serum amine oxidase (amine: O2 oxidoreductase, deaminating, E.C. 1.4.3.6) was purified according to [7 (link)]. Tannic acid, spermine, 4-amino-antipyrine, horseradish peroxidase type II (HRP, 179 U/mg), N,N-dimethylaniline were obtained from Sigma-Aldrich/Merck (St. Louis, MO, USA). Water for sample preparation and analysis was obtained from a Genie Direct-Pure (RephiLe Bioscience Ltd., Shanghai, China) ultrapure water device with a resistivity of at least 18 MΩ cm−1. A series of Nd-Fe-B magnets (N35, 263–287 kJ/m3 BH, 1170–1210 mT flux density by Power magnet—Germany) was used to magnetically recover the particles.
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8

Construction of P450 3A4-BMR Fusion Protein

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The pCW-3A4-BMR plasmid containing the gene of human P450 3A4 fused to the reductase of cytochrome P450 BM3 from B. megaterium (BMR) linked via a Pro-Ser-Arg linker was available in our laboratory (Dodhia et al., 2006 (link)). GenElute plasmid miniprep kit was obtained from Sigma (Italy). PCR purification kit and gel extraction kit were purchased from Macherey-Nagel (Germany).
The primers for PCR and oligonucleotides for the linker region between P450 3A4 and BMR reductase were prepared by MWG (Germany). DNA Ladder, restriction endonucleases enzymes Avr II and Hind III, Vent polymerase, T4 DNA ligase enzyme and buffers used in sub-cloning were from New England Biolabs (UK) and Promega (Italy). Horse heart cytochrome c, erythromycin, testosterone, 6β-hydroxytestosterone, horseradish peroxidase type X, superoxide dismutase from bovine erythrocytes, catalase, N,N-dimethylaniline, and 4-amino-2,3-dimethyl-1-phenyl-3-pyrazolin-5-one were purchased from Sigma (Italy). NADPH (tetrasodium salt) was acquired from Calbiochem (Germany). Human CPR was purchased from Life Technologies. All other chemicals, biochemicals used in this study were purchased from Sigma (Italy) at the highest available grade and used as recommended by the manufacturer.
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9

Purification of Organic Compounds

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Anhydrous dichloromethane (DCM, spectroscopic grade ≥ 99.8%), aniline (99.5%), N-methylaniline (98%), N,N-dimethylaniline (99%), benzylamine (99%), and toluene (anhydrous, 99.8%) were purchased from Sigma-Aldrich and used without further purification.
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10

Femur Specimen Dehydration and Embedding

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Once explanted, the distal ends of the implanted femurs were fixed in formalin. After this, the bone specimens (n = 18) were dehydrated with graded ethanol. They were then infiltrated and embedded in glycol methyl-methacrylate (GMMA, VWR International SAS, Fontenay sous Bois, France) obtained by mixing 90% purified methyl-methacrylate (VWR, Radnor, PA), 9% polyethylene glycol (VWR) and 1% benzoyl peroxide (Merck, Kenilworth, NJ). Polymerization was started with a mixture of N,N-dimethylaniline, 99% (Sigma-Aldrich) and propan-2-ol (Prolabo, France) at 4 ¯C for 1 week. The resulting resin blocks were then polished and cut into 2 pieces: one half of each sample was used for either SEM or histologic analysis.
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