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Acinetobacter baumannii

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Acinetobacter baumannii is a species of gram-negative bacteria commonly found in soil and water. It is a well-known opportunistic pathogen that can cause a variety of nosocomial infections, including pneumonia, bloodstream infections, and wound infections. Acinetobacter baumannii is notable for its ability to develop resistance to a wide range of antibiotics, making it a significant challenge in healthcare settings.

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50 protocols using acinetobacter baumannii

1

Bacterial Strain Characterization for Diagnostic Assay

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Reference bacterial strains as the source for developing the PAC were derived from the American Type Culture Collection (ATCC): K. pneumoniae ATCC BAA-1706, S. aureus ATCC 25923, S. pneumoniae ATCC 49619, P. aeruginosa ATCC 27853, M. tuberculosis H37Rv, and H. influenzae ATCC 49247. Other standard reference strains used for the sensitivity and specificity evaluation in this study includes K. pneumoniae ATCC BAA-1705, S. aureus ATCC 33591, S. pneumoniae ATCC 51916, S. pneumoniae ATCC 700673, P. aeruginosa ATCC 9027, Mycobacterium bovis ATCC 35720, H. influenzae ATCC 49766, Acinetobacter baumannii ATCC 19606, Aeromonas hydrophila ATCC 7966T, Bacillus cereus ATCC 14579, Bacillus subtilis ATCC 6633, Enterobacter aerogenesATCC 13048, Enterobacter cloacae ATCC 13047, Escherichia coli ATCC 25922, E. coli O157 non-toxigenic NCTC 12900, Listeria monocytogenes ATCC 7644, Neisseria meningitidis ATCC 13090, Neisseria gonorrhoeae ATCC 43069, Proteus mirabilis ATCC 29245, Staphylococcus epidermidis ATCC 12228, Streptococcus viridians ATCC 36395, Streptococcus pyogenes ATCC 19615, Streptococcus mutans ATCC 35668, and Streptococcus sanguinis ATCC 10556. A total of 129 clinical isolates were acquired from the Department of Medical Microbiology and Parasitology, Universiti Sains Malaysia (USM), Malaysia.
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2

Antimicrobial Peptide Evaluation Against Pathogenic Bacteria and Candida

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The following pathogenic bacterial strains were used: The Gram-positive Enterococcus faecalis (ATCC 29212), Staphylococcus aureus (HNCMO112011), Listeria monocytogenes (ATCC 19111) and the Gram-negative Pseudomonas aeruginosa (ATCC 27853), Escherichia coli (ATCC 8739), Salmonella enterica (ATCC 13076), Klebsiella pneumoniae (NCTC 13440), Acinetobacter baumannii (ATCC 17978) obtained from the ATCC (United States) and NCTC (National Collection of Type Cultures–England). For the antifungal experiment the Candida albicans W01 strain (Ördögh et al., 2014 (link)) was used. Antimicrobial activities of peptides against ∼107 log phase bacteria were tested in Potassium-Phosphate Buffer (PPB, pH 7.4) as described by Jenei et al. (2020) (link) while anti-Candida assays were done according to Szerencsés et al. (2021) (link). The two-fold dilution series of peptides ranged from 25 μM to 0.125 μM, while that of the antibiotics ampicillin (Merck) and miconazole (Duchefa Biochemie) from 10.24 mM to 0.1 μM. The lowest concentration of the antimicrobial agents, which completely eliminated viable bacteria or C. albicans were considered as the minimal bactericidal concentration (MBC) and minimal fungicidal concentration (MFC).
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3

Microencapsulated Plant Extract Antimicrobial Evaluation

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For this analysis and for the preparation of microencapsulated plant extract, the alcohol was evaporated from the plant extracts in a Heidolph Rotavapor (Heidolph Instruments GmbH & Co, Schwabach, Germany) at a temperature of 40 °C and a pressure of 175 mbar.
The antimicrobial properties of extracts were tested against gram-positive bacteria (Staphylococcus aureus ATCC 25923, Bacillus cereus ATCC 11778, Enterococcus faecalis ATCC 19433, Geobacillus stearothermophilus ATCC 7953), gram-negative bacteria (Escherichila coli ATCC 25922, Acinetobacter baumannii ATCC® BAA-747, Salmonella abony NCTC 6017), as well as one pathogenic fungus Candida albicans ATCC 10231. All test culture was purchased from American Type Culture Collection (ATCC), except Salmonela abony, which was obtained from The National Collection of Type Cultures (NCTC; UK). Bacterial cultures were pre-cultured in Mueller Hinton broth overnight at 37 °C. Each strain was adjusted to a concentration corresponding to the 0.5 McFarland standard [17 (link)]. The fungal inoculum was prepared from the 48-hour culture grown in Potato dextrose broth [18 ].
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4

Isolation and Cultivation of Marine Strain M7

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Strain M7 was isolated from a mussel sample collected on a slope in the South China Sea (17°6′12.2″ N, 111°29′58.6″ E). The purified isolation was inoculated onto a malt extract agar (MEA; OXOID Ltd., Basingstoke, UK) with 3% sea salt, and cultured for 5 days at 28 °C before culture preservation.
The indicator strains Escherichia coli ATCC 25922, Klebsiella aerogenes ATCC 700603, Pseudomonas aeruginosa PA101, methicillin-resistant Staphylococcus aureus (MRSA) USA300, methicillin-resistant Staphylococcus epidermidis (MRSE) ATCC 35984, Micrococcus luteus ACCC 11001, and Acinetobacter baumannii ATCC 19606 were stored in the Marine Pharmaceutical Laboratory of China Pharmaceutical University.
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5

Antimicrobial Susceptibility of Skin Flora

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All bacterial strains were purchased from the American Type Culture Collection (ATCC, Manassas VA). Lyophilized samples were rehydrated and cultured onto appropriate media and subcultured at least 3 times before use. Pathogens included: Acinetobacter baumannii (ATCC 19606), Candida albicans (ATCC 24433), Escherichia coli (ATCC 29214), vancomycin-resistant Enterococcus faecalis (ATCC 51575), methicillin-resistant Staphylococcus aureus (ATCC 43300), methicillin-susceptible Staphylococcus aureus (ATCC 6538), and Pseudomonas aeruginosa (ATCC 10145). Representative normal skin flora included: Acinetobacter lwoffii (ATCC 15309), Corynebacterium striatum (ATCC BAA1293), Micrococcus luteus (ATCC 49732), and Staphylococcus epidermidis (ATCC 14900).
All bacteriological media, chemicals, and disposable laboratory supplies were purchase from ThermoFisher Scientific (Watham MA) unless otherwise noted.
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6

Antibacterial Screening of Compounds

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From CICC (China Center of Industrial Culture Collection, China), standard strains of Staphylococcus aureus (ATCC 29213), Bacillus subtilis (A186), Escherichia coli (ATCC 25922), Pseudomonas aeruginosa (ATCC 27853) and Acinetobacter baumannii (ATCC 19606) were purchased. The bacteria were inoculated in LB Broth media overnight at 37 °C. The cultures were quantified with a spectrophotometer, diluted to A = 0.02 (OD600) and then dispensed to 96-well plates (100 µL/well). All isolated compounds 123, positive controls ampicillin and polymyxin (1–128 µM by double dilution method) and DMSO (placebo control) were then added (n = 3). Plates were incubated for 16 h at 37 °C, and the inhibitory rate was calculated by measuring the absorbance at 600 nm. When compared to positive control groups, bacterial growth inhibition greater than 80% was used to determine the MICs.
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7

Bacterial Strains for Antimicrobial Assays

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The bacteria used in this study, which were purchased from American Type Culture Collection (Manassas, Virginia, USA), the German Collection of Microorganisms and Cell Cultures (Leibniz Institute, Braunschweig, Germany), or Keio Collection, Japan [51 (link)], were as follows: Bacillus subtilis DSMZ 4181, Enterococcus faecalis ATCC 29212, Staphylococcus aureus ATCC 25923 and 29213, Staphylococcus epidermidis ATCC 12228, Acinetobacter baumannii ATCC 17978 and 19606, Burkholderia cenocepacia J2315, Escherichia coli ATCC 25922, BW25113, BW25113 ΔsbmA [51 (link)], and O18K1H7, Klebsiella pneumoniae ATCC 13883 and 700603, Pseudomonas aeruginosa ATCC 27853 and PAO1, Salmonella typhimurium ATCC 14028, and Stenotrophomonas maltophilia ATCC 13637. Overnight cultures of each strain were diluted 1:30 in fresh Mueller–Hinton broth (MHB; Difco) and incubated at 37 °C with shaking (140 rpm) for approximately 2 h (mid-log phase) until an optical density (OD) of ≈ 0.3 at 600 nm was achieved. E. coli BW25113 ΔsbmA was grown in MHB with the addition of 50 μg/mL kanamycin (Sigma, Milan, Italy).
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8

Cultivation of Diverse Bacterial Species

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Mycobacterium tuberculosis (H37Ra and H37Rv) and Mycobacterium smegmatis (mc2 155) were cultured in Middlebrook 7H9 broth supplemented with 0.05% (v/v) polysorbate 80, 0.5% (v/v) glycerol and 10% (v/v) oleic acid-albumin-dextrose-catalase (OADC). Mycobacterium bovis (TMC 1012 and TMC 1103) was isolated on Lowenstein-Jensen medium and cultured in supplemented Middlebrook 7H9 broth with 40 mM sodium pyruvate. Methicillin resistant Staphylococcus aureus (MRSA; USA300), Methicillin sensitive Staphylococcus aureus (MSSA; NRS72), Klebsiella pneumoniae (NCTC 9633), Salmonella enterica (ATCC 14028), Pseudomonas aeruginosa (POA-1) and Acinetobacter baumannii (ATCC 19606) were cultured in cation adjusted Mueller-Hinton broth (CAMHB). Staphylococcus aureus (Newman), Bacillus anthracis (Sterne 34F2), Bacillus subtilis (168 and PY79) and Escherichia coli (DH5α) were cultured in lysogeny broth (LB). Streptococcus mitis (NCTC 12261), Enterococcus faecalis (ATCC 29212), Haemophilus influenzae (ATCC 49247) was cultured in brain heart infusion (BHI). All cultures were grown at 37°C in a shaking incubator (200 rpm), as advised by the Clinical and Laboratory Standards Institute (CLSI).
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9

In vitro Evaluation of Antimicrobial and Anticancer Activities

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Chemicals and solvents were purchased from Sigma-Aldrich (Germany), unless otherwise stated. Cell lines and the required media were obtained from the Pharmacological and Diagnostic Centre (PDRC) (Al Ahliyya Amman University, Jordan). In vitro tests were performed using the following cell lines: Breast Cancer Cell MCF-7 (ATCC number: HTB-22), Human Carcinoma Cells HT-29 (ATCC number ATCC HTB-38), and A549 lung Cancer Cell (ATCC number: CCL-185). Bacterial strains were obtained from PDRC (Al Ahliyya Amman University, Jordan). Antibacterial activities were evaluated against the following strains: Acinetobacter baumannii (ATCC 19606), Escherichia coli (ATCC 8739), Proteus mirabilis (ATCC 12453), Pseudomonas aeruginosa (ATCC 27853), and Staphylococcus aureus (ATCC 43300).
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10

Biofilm Formation Characteristics of Common Pathogens

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Bacterial isolates were chosen because of their use in various applications including standards assays and animal models, their known pathogenicity as well as their ability to form well-established biofilms [23 –26 ]. All isolates were purchased from the American Type Culture Collection (ATCC) and included Staphylococcus aureus ATCC 6538, Pseudomonas aeruginosa ATCC 27853, Escherichia coli ATCC 9637, Acinetobacter baumannii ATCC BAA 1605, Bacillus subtilis ATCC 19659, methicillin-resistant S. aureus (MRSA) USA 300, MRSA USA 400, Streptococcus mutans ATCC 25175, S. epidermidis ATCC 35984, and carbapenem-resistant Klebsiella pneumoniae ATCC BAA-1705. All were subcultured on tryptic soy agar (TSA) or, in the case of some experiments with S. mutans, BHI agar, and incubated overnight at 37°C. Frozen stocks were maintained in BHI broth with 30% glycerol. Isolates were subcultured and incubated 24–72 hours prior to inoculation in a biofilm reactor.
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