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26 protocols using agomir

1

Modulating circZNF609 and miR-134-5p in LSCC Cell Lines

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The human LSCC cell lines TU177, TU686, TU212, LSC-1 and Hep-2 were obtained from Shanghai Institute of Biological Science Cell Center. Hep-2 cells were cultured in F12K medium (Invitrogen), and the remaining cells were cultured in RPMI 1640 medium (Invitrogen).
Cell transfection was carried out when cells in culture reached 60–80% confluence using Lipofectamine® 2000. Small interfering RNAs (siRNAs) targeting circZNF609#1 (si-circZNF609#1, 5ʹ-GTCAAGTCTGAAAAGCAATGA-3ʹ), circZNF609#2 (5ʹ-TGCCCTAGTACTACCCTGCAT-3ʹ) and circZNF609#3 (5’-TTGACTGCATCGTAGCCAAAC-3’) and negative control (si-NC, 5’-UUCUCCGAACGUGUCACGUTT-3’) were purchased from Shanghai GenePharma Co., Ltd. The miR-134-5p mimetic, agomir and controls were purchased from Guangzhou RiboBio Co., Ltd. The transfection concentrations of oligonucleotides were as follows: si-NC, 40 nM; si- circZNF609, 40 nM; si-NC, 40 nM; si-EGFR, 40 nM; miR-134-5p mimetic, 50 nM; and miRNA control, agomir and miRNA control, 50 nM. Lipofectamine® 2000 Reagent and si-RNAs or miR-mimic were diluted with serum-free DMEM medium, mixed together and incubated at room temperature for 20 min. This solution was subsequently added to LSC-1 and Hep-2 cells for transfection at 37°C for 4–6 h in a humidified incubator containing 5% CO2.
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2

Spinal Cord Injury Protocol in Rats

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We used Sprague-Dawley rats aged between 6 and 7 weeks (n = 36 rats) weighing approximately between 225 and 250 g. The animal study protocols were sanctioned by the Animal Ethical Review Board of Zhongnan Hospital of Wuhan University, China. The rats were housed under pathogen-free standard lab conditions at 25℃ with a relative humidity of 50–60% in 12 h dark and light cycle. The rats were provided free access to food and water. The rats were divided into four groups (n = 6/group), namely, the SCI-induced group, sham-operated group, miR-142-3p agomir group and miR-142-3p antagomir group (NC group). The sham-operated rats were subjected to laminectomy at T10 without the weight-drop injury; similarly, the SCI group rats underwent T10 laminectomy by the New York spinal segment impactor, and miR-142-3p antagomir-(NC) and agomir-treated rats were subjected to SCI and were given dose intrathecally (1 µL/h, 20  nmol/mL). The agomir and antagomir were obtained from RiboBio (Guangzhou, China).
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3

Regulation of Bone Homeostasis by miR-106b

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Thirty-six female WT C57BL/6 mice aged 6 weeks were equally randomized to 6 groups, of which 5 groups underwent OVX operation, and the remaining group underwent sham operation. Two months after operation, the 5 OVX groups of mice respectively received 10nmol/per mouse of agomir-106b, con-agomir-106b, mut-antagomir-106b, antagomir-106b or 0.2ml PBS through the tail vein on day 1-3 for 3 consecutive weeks. A section of coccygeal vertebrae were get out from all the mice before injection and at 3, 4.5 and 6 weeks after the first injection (Figure 7A). Six weeks after the first injection, mice were euthanized. Bone and serum samples were collected for further experiments. The agomir, con-agomir, mut-antagomir and antagomir were all purchased from RiboBio (RiboBio, Guangzhou, China). All procedures involving the mice were approved by the Animal Management Committeeof the Second Military Medical University.
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4

Endometrial Cancer Cell Culture Protocol

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HEC-1-A cells (human endometrial carcinoma cells-1-A) are human endometrium adenocarcinoma cell line and were obtained from American Type Culture Collection (Manassas, VA, USA) and were cultured in McCoy’s 5A modified medium supplemented with 10 % fetal bovine serum and 1 % penicillin/streptomycin (Sigma-Aldrich, St Louis, MO, USA). HEC-1-A cells are used as an accepted model to study endometrial cancer [15 (link)]. MiR-23a mimic, inhibitor, agomir or antagomir were purchased from RiboBio Inc (GuangZhou, China). Human recombinant TGFβ1 was obtained from R & D Systems Inc (Minneapolis, MN, USA).
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5

miRNA-708-3p Modulation in ADAM17 Silencing

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The miRNA-708-3p mimic, inhibitor and agomir were synthesized by RiboBio Co. Ltd. (Guangzhou, China). The ADAM17 small interfering RNA was synthesized and purchased from GenePharma (Shanghai, China). All transfections were performed using the DharmaFECT1 reagent (Dharmacon, Austin, TX, USA) according to the manufacturer’s instructions.
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6

Regulation of Autophagy by miRNA

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Chloroquine (CQ), 4′,6-Diamidino-2-phenylindole (DAPI) and rapamycin were obtained from Sigma-Aldrich, MO, USA (C6628, D9564, 37094). miRNA mimics, inhibitors, agomir, and antagomir were purchased from RiboBio, Guangzhou, China (miR10000095, miR20000095, miR40000095, miR30000095). ATG7 plasmid was purchased from GeneChem Technologies, Shanghai, China (POSE142067150). GFP-LC3 plasmid was constructed by the Central Laboratory of Renji Hospital. Plasmids were validated by DNA sequencing in Beijing Genomics Institute. Transfection of nucleic acids was performed using Lipofectamine 2000 (11668, Life Technologies, CA, USA) according to the manufacturer's instructions. When the effects of different doses of miRNA transfection were compared, the same dose of Lipofectamine 2000 was used according to the largest dose.
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7

Investigating miR-146a's Role in Heart Failure

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To determine the functional role of miR-146a in MI-induced heart failure, 4 weeks after MI, rats were injected with miR-146a antagomiR (a 2′OME+5′chol modified miR-146a inhibitor, 80 mg/kg/day) or agomiR (a 2′OME + 5′chol modified miR-146a agonist, 30 mg/kg/day) via tail vein for three consecutive days. miR-146a antagomiR and agomiR were synthesized by Ribobio Co. (Guangzhou, China). The sequences of miR-146a agomiR are as follows: 5′-UACGCCCUUUUAACAUUGCAUCG-3′. The antagomiR is a singles-tranded RNA analog complementary to the mature miR-146a, which is chemically modified and cholesterol conjugated from a hydoxyprolinol linked cholesterol solid support and 2′-Ome phosphoramidites. After 2 weeks of injection, the rats were killed.
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8

siRNA-mediated AK4 Knockdown

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The mimic, antagomir,agomir, siRNA, negative control (NC) and riboFECT CP transfection kit were supplied by Guangzhou Ribobio, China. And the reporter plasmids in Cignal Finder™ Pathway Reporter Arrays came from SABiosciences, USA. Transfection of both ribonucleic acid reagents or plasmids mentioned in this paper was performed according to the manufacturer’s instructions. The sequences used in this study are as follows:
si-AK4:

GCCTAATGATGTCCGAGTT

5’-GCCUAAUGAUGUCCGAGUU dTdT-3′

3′-dTdT CGGAUUACUACAGGCUCAA-5’

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9

Mimic and Agomir Regulation of miR-873a-5p

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The miR-873a-5p mimic, negative control mimic (NC mimic) and agomir were purchased from RiboBio (China). They were dissolved and diluted according to the instructions provided by the manufacturer. The microglia were transfected with 100 nM aliquots of either the miR-873a-5p mimic or NC mimic using RiboFECT™ CP (RiboBio, China) as per the manufacturer’s protocol. After dissolving and mixing the miR-873a-5p agomir, it was allowed to stand for 15 min at room temperature and was then used for lateral ventricle injection. A Hamilton syringe (Gaoge, China) was inserted at 0.5 mm posterior and 1.0 mm lateral to the bregma and 3.0 mm ventral to the skull under the guidance of a stereotaxic instrument (RWD Life Science). A single dose of miR-873a-5p agomir (5 nM) was infused into the lateral ventricle 20 min after CCI.
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10

Targeting miR-181a-5p and Endocan in HRECs

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Control and endocan‐targeting small interfering RNAs (siRNAs) were synthesized by GenePharma Co. Ltd. (Shanghai, China). AgomiR, AgomiR control, miRNA mimic, inhibitor, and nontargeting control oligonucleotides (RiboBio, Guangzhou, China) were transfected into HRECs using riboFECTTM CP Transfection Reagent (RiboBio). Briefly, cells were seeded onto sixwell plates (Corning Inc., Corning, NY) at a density of 5 × 104 cells/ml, transfected with miR‐181a‐5p mimic, miR‐181a‐5p inhibitor, endocan siRNA, or negative control using Lipofectamine 2000 (Invitrogen, Carlsbad, CA) according to the manufacturer's instructions. After 48 hr, cells were treated with rhVEGFA (20 ng/ml) for the indicated time period. Specific sequences are listed in Table S1.
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