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20 protocols using anti lsd1

1

Western Blot Analysis of HBP1 and LSD1

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Cell protein lysates were separated by SDS‐PAGE (Bio‐Rad, Hercules, CA, USA) and transferred to 0.45 μm PVDF transfer membranes (Thermo Fisher Scientific, Rockford, IL, USA). The membrane was blocked with 5% nonfat dry milk in 0.1% TBS‐Tween‐20 (TBST) for 2 hours, and then incubated with primary Abs for the night. The blots were washed with TBST three times for approximately 5 minutes a time, followed by incubation with HRP‐conjugated secondary Abs. Enhanced chemiluminescent HRP substrate was used for quantification by densitometry (Quantity One software; Bio‐Rad). Anti‐GAPDH (Proteintech Group, Chicago, IL, USA) was used as a control. Anti‐HBP1 was purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Anti‐LSD1 was purchased from Cell Signaling Technology (Boston, MA, USA).
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2

Antibody Characterization and Cell Line Authentication

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Anti-HA, anti-tubulin and anti-GAPDH antibodies were purchased from Santa Cruz Biotechnology. Anti-ERK1/2, anti-pERK1/2 (Thr202/Tyr204), anti-Akt, anti-pAkt (Ser473) and anti-LSD1 antibodies were obtained from Cell Signaling. Dulbecco's modified Eagle's medium (DMEM), fetal bovine serum, penicillin, and streptomycin were from Invitrogen. HEK293, MeWo and MCF7 cell lines were purchased directly from ATCC between 2008 and 2015. The ATCC cell lines were characterized by short tandem repeat (STR) DNA profiling. MCF10A cell was received as a gift from Dr. Mircea Ivan's lab in Indiana University School of Medicine, and was authenticated by morphology. All cell lines were passaged for fewer than 6 months after resuscitation.
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3

Western Blot Antibody Validation

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Anti-LSD1 (Cell Signaling Technology, catalog 2139), anti-TP53 (Santa Cruz Biotechnology, catalog sc-126), anti-p21(CDKN1A) (Cell Signaling Technology, catalog 2947), anti-GAPDH (Santa Cruz Biotechnology, catalog sc-32233), anti-H3K4me2 (Cell Signaling Technology, catalog 9725), anti-H3K27Ac (Active Motif, catalog 39133), and anti–Histone H3 (MilliporeSigma, catalog 06-755) were used for protein detection by Western blotting.
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4

Antibody Usage in Protein Detection

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The following commercially available antibodies were used: anti-Flag (Sigma), anti-HA (Roche), anti-LSD1 (Cell signaling), anti-RNA Polymerase II (Berkeley Antibody Company), anti-β-actin (Santa Cruz), anti-GFP (Santa Cruz), anti-Lamin A/C (Santa Cruz) and anti-GAPDH (Santa Cruz). Anti-RORα2 antibody (target epitope is GKPPYSQKEDKEVQT-C) was generated by Abmart (China).
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5

Antibody-based Protein Detection Protocol

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The following antibodies were used for immunodetection: M2-anti-FLAG (HRP; Sigma A8592), anti-FLI-1 (Santa-Cruz sc-356X), anti-α-Tubulin (Calbiochem CP06), anti-HA (Abcam ab9110), anti-H3 total (Abcam ab1791), anti-H3K4 me1 (Abcam ab8895), anti-H3K4 me2 (Millipore, 07-030), anti-H3K4 me3 (Active Motif, 39159), anti-H3K9 me1 (Abcam ab9045), anti-H3K9 me2 (Abcam ab1220), anti-H3K9 me3 (Abcam ab8898), anti-HMOX1 (Sigma SAB1410641), anti-Paxillin (BD Transduction Labs 610619), anti-LSD1 (Cell Signaling Technology 2184) AlexaFluor secondary (Molecular Probes), AlexaFluor Phalloidin (Molecular Probes). HCI2509 is previously described (33 (link)).
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6

Immunodetection of Epigenetic Markers

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Immunodetection was performed with the following antibodies: anti-α-Tubulin (Calbiochem CP06), anti-LSD1 (Cell Signaling C69G12), anti-H3 (Cell Signaling Technology D2B12), anti-H3K4me3 (Cell Signaling Technology C42D8), anti-H3K9me2 (Cell Signaling Technology 9753), anti-H3K27me3 (Cell Signaling Technology C36B11). Propidium iodide (Sigma P4864), medroxyprogesterone 17-acetate (MPA; Sigma M1629). HCI2509 is previously described [35 (link)].
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7

Investigating Notch Signaling Cascades

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Retroviral Infections, qRT-PCR Analysis, nuclear extraction and Western Blotting were performed as described previously (26 ,27 (link)). Cell samples were collected 72h post-infection. The following antibodies were used in Western blotting: anti-Notch1 (1:1000, abcam), anti-CSL (1:1000; polyclonal), anti-MAML1 (1:1000, cell signaling), anti-LSD1 (1:1000, cell signaling) and anti-EZH2 (1:1000, cell signaling).
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8

Western Blotting Analysis of Tumor Proteins

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Western blotting was performed according to the standard protocol with the protein lysates harvested form fresh tumor samples and cultured cells. Two µg of total protein was applied to one end of a 12% SDS polyacrylamide gel. After electrophoresis proteins on the gel were transferred onto a nitrocellulose membrane (Millipore, Temecula, CA, USA). After blocking with non-fat milk for almost 1 h at room temperature, the membranes were incubated overnight at 4 °C with primary antibodies: anti-LSD1 (1:1000), anti-H3K4me2 (1:1000), anti-H3K9me2 (1:1000), anti-P53(1:500), anti-P21 (1:500), anti-CDK4 (1:1000), anti-CDK6 (1:1000), anti-GAPDH (1:2000) and anti-β-actin (1:1000), which were all purchased from Cell Signaling Technology (Boston, Massachusetts, USA). Membranes were washed three times and incubated with secondary antibodies (1:500; Abcam, Cambridge, MA, USA) at room temperature for 1 h. Immunoreactive bands were detected by using Amersham Hyper lm ECL (GE Healthcare Life Sciences). GAPDH and β-actin were used as loading controls.
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9

Western Blot Analysis of Epigenetic Regulators

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Protein lysates were prepared as previously described [38 (link)]. The protein samples were resolved by SDS-PAGE and transferred onto PVDF membranes (Roche, Basel, Switzerland). The membranes were then incubated with the following antibodies: anti-LSD1 (Cell Signaling Technology), anti-EZH2 (Cell Signaling Technology), anti-p16 (Santa Cruz), anti-p21 (Santa Cruz), anti-Cyclin D1 (Santa Cruz), anti-Cyclin E (Santa Cruz), anti-H3K27Me3 (Millipore), and anti-H3K4Me3 (Millipore). Antibody-labeled protein bands on the PVDF membranes were detected using a G:BOX F3 (Syngene, Cambridge, UK).
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10

Western Blot Analysis of Liver Proteins

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Liver samples were homogenized in RIPA buffer (20 mM Tris-Cl, 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1% IGEPAL, and 1% deoxycholate) supplemented with Halt protease/phosphatase inhibitor (Thermo Fisher Scientific), centrifuged for 10 minutes at 10 000× g and protein concentration in the supernatants measured by the BCA method (Thermo Fisher Scientific). Fifty μg protein was separated on CriterionTGX Any kD precast gels (Bio-Rad Laboratories, Hercules, CA) and electroblotted onto Immun-Blot PVDF membranes (Bio-Rad Laboratories). Blots were incubated overnight at 4°C with the indicated primary antibodies (see below), and then, for 1 hour with HRP-conjugated secondary antibodies (Thermo Fisher Scientific). Signals were developed with Clarity Max Western ECL substrate and collected using the ChemiDoc imaging system and quantitated with Image Lab software, version 6.0.1 (all from Bio-Rad Laboratories). Primary antibodies used: anti-FRA-1 (catalog no. PA5–76185; Thermo Fisher Scientific), anti-IL-1β (catalog no. ab9722; Abcam, Cambridge, MA), anti-phospho-JNK1 (catalog no. 9255S; Cell Signaling Technology, Danvers, MA), anti-JNK1 (catalog no. 370; BioVision, Milpitas, CA), anti-LSD1 (catalog no. 2139; Cell Signaling Technology), and anti-β-actin (catalog no. 4970; Cell Signaling Technology).
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