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Drx 500 nmr spectrometer

Manufactured by Bruker
Sourced in Germany, Switzerland

The DRX-500 NMR spectrometer is a nuclear magnetic resonance (NMR) instrument designed for analytical applications. It operates at a magnetic field strength of 11.7 Tesla, corresponding to a proton (1H) frequency of 500 MHz. The DRX-500 provides high-resolution NMR analysis capabilities for a variety of sample types.

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29 protocols using drx 500 nmr spectrometer

1

Phytochemical Analysis of Plant Extracts

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The methanol and hydroethanol were used as solvents for the extraction of plant material; n-hexane, dichloromethane (CH2Cl2), ethyl acetate (EtOAc) and methanol (MeOH) were used as pure or dual mixtures at different polarities for isolation of compounds. The 1H and 13C NMR spectra were registered at 500 MHz and 125 MHz, respectively, on Bruker DRX 500 NMR spectrometers (Bruker, Rheinstetten, Germany), with tetramethylsilane as reference, giving the chemical shifts in ppm and the coupling constants in Hertz. Column chromatographies were carried out on 230–400 mesh silica gel (Merck, Darmstadt, Germany), 70–230 mesh silica gel (Merck, Darmstadt, Germany) and sephadex LH-20 (Sigma-Aldrich, Munich, Germany). Precoated plates of silica gel 60 F254 (Merck; Darmstadt, Germany) were used for analytical purposes and the spots were detected with a UV lamp at 254 and 366 nm and by spraying with 50% H2SO4 followed by heating.
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2

Chromatographic Separation and MS Analysis

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Flash column chromatographic separations were accomplished on Biotage Isolera Four system (Biotage, Uppsala, Sweden). NMR was recorded on DRX-400 and DRX-500 NMR spectrometers (Bruker, Rheinstetten, Germany). ESI-, APCI- and HR ESI-MS were recorded on Agilent 1290 LC-MS or Agilent G6530 TOF MS spectrometer (Agilent Technologies Inc., California, USA). Western blot results were visualized on Mini-HD9-Auto Biomolecular imager (Leader Oriental Technology. LTD, Beijing, China). Dichlone and flavonoids were purchased from Fisher Scientific (Fair Lawn, NJ, USA) and Ark Pharm, Inc. (Arlington Heights, IL, USA). Cell lines were gotten from the American Type Culture Collection (Manassas, VA). Caspase-3 (3G2) mouse mAb, caspase-3 antibody, cleaved caspase-3 (Asp175) (5A1E) rabbit mAb, PARP (46D11) rabbit mAb and horseradish peroxidase (HRP) were purchased from Cell Signaling Technology, Inc (Danvers, MA, USA).
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3

Spectroscopic Characterization of Compounds

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HR-ESI-MS spectra were recorded on a QTOF-MS Spectrometer (QTOF Bruker) equipped with a HESI source. The spectrometer operated in positive mode (mass range: 100-1500, with a scan rate of 1.00 Hz) with automatic gain control to provide high-accuracy mass measurements within 0.40 ppm deviation using Na Formate as calibrant. The 1 H and 13 C NMR spectra were recorded at 500 and 125 MHz, respectively, on Bruker DRX 500 NMR spectrometers (Bruker Corporation) in CDCl 3 or CD 3 OD. Chemical shifts (δ) were reported in ppm using tetramethylsilane (TMS) (Sigma-Aldrich) as an internal standard, while coupling constants (J) were measured in Hertz (Hz). Column chromatography (width 5.5-8.5 cm; depth 25.4 cm) was carried out on silica gel 230-400 mesh and 70-230 mesh (Merck). IR spectra were recorded with an Alpha spectrometer (Bruker) by attenuated total reflection (ATR) technique on a diamond crystal. TLC was performed on Merck precoated silica gel 60 F 254 aluminum foil (Merck), and spots were detected using diluted sulfuric acid (50 % [v/v]) spray reagent before heating. The
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4

NMR Spectroscopic Analysis of Organic Compounds

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The samples were dissolved in the deuterated solvent acetone-d6 and put into a 5 mm NMR tube. All experiments were performed on a Bruker DRX-500 NMR spectrometer (Bruker, Rheinstetten, Germany), operating at a frequency of 500 MHz for 1H NMR observation, and 125 MHz for 13C NMR observation (at room temperature). The 2D NMR experiments included heteronuclear single-quantum correlation (HSQC) and heteronuclear multiple-bond correlation (HMBC). NMR spectra were carefully processed with the TOPSPIN2.1® software (Bruker). The spectra recorded in acetone-d6 were referenced to the solvent signal at δH 2.05 ppm and δC 29.92 ppm.
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5

Photochemical Degradation of PVC Using Tin Compounds

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PVC was obtained from Petkim Petrokimya (Istanbul, Turkey). The tin reagents; namely triphenyltin chloride (Ph3SnCl; 95%), dibutyltin oxide (Bu2SnO; 98%), dibutyltin dichloride (Bu2SnCl2; 96%), and dimethyltin dichloride (Me2SnCl2; 97%) were purchased from Merck (Gillingham, UK). The electronic spectra (200–900 nm) was measured in dimethylformamide (1 × 10−3 M) using a Shimadzu-160 spectrophotometer (Shimadzu, Kyoto, Japan). FTIR spectra (400–400 cm−1) using a KBr disc technique were recorded on a Shimadzu FTIR 8300 spectrophotometer (Shimadzu, Tokyo, Japan). 1H (500 MHz) and 13C NMR (125 MHz) spectra were recorded in DMSO-d6 using a Bruker DRX500 NMR spectrometer (Bruker, Zürich, Switzerland). Energy dispersive X-ray (EDX) images were captured using a Bruker XFlash 6 10 (Bruker, Tokyo, Japan) and the microscopic images were captured by a Meiji Techno Microscope (Meiji Techno, Tokyo, Japan). The field emission scanning electron microscope (FESEM) images (15 kV) were captured by a TESCAN-MIRA3 system (TESCAN, Kohoutovice, Czech Republic). A Veeco atomic force microscope (AFM) (Veeco Instruments Inc., Plainview, NY, USA) was used to capture AFM images. An accelerated weather-meter QUV tester (Q-Panel Company; Homestead, FL, USA) was used to irradiate PVC films using UV light (λmax = 365 nm; light intensity = 6.43 × 10−9 ein dm−3s−1) at 25 °C.
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6

NMR Analysis of Urine Samples

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To prepare the samples for 1H NMR analysis, 3-trimethylsilyl-2H4-propionic acid and deuterium oxide (99.9% D; Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) in phosphate buffer were added to each sample. The Bruker DRX-500 NMR spectrometer (Bruker Corporation, Ettlingen, Germany) was used, operating at 500.13 MHz 1H resonance frequency at 298 K (25°C). The Carr-Purcell-Meiboom-Gill pulse sequence was applied to decrease the intensity of the spectra of the macromolecules (24 (link),25 (link)). ProMetab software (version Prometab_v3_3) in MATLAB (version 8.4; MathWorks, Cambridge, UK) was used to perform 1H NMR spectrum partitioning, data normalizing and the shift alignment of the urine samples (26 (link)–29 (link)).
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7

NMR Analysis of [U-2H, U-15N]iG80b ecRNH

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[U-2H, U-15N]iG80b ecRNH was prepared as described elsewhere [16 (link)]. NMR data were recorded for a sample of 1.0 mM [pH 5.5; 100 mM d3-sodium acetate at pH 5.5, 10% (v/v) deuterium oxide, 0.02% (w/v) sodium azide, and 1 mM d10-dithiothreitol] at 300 K on a Bruker DRX500 NMR spectrometer. 15N R1, 15N R2, and 1H-15N nuclear Overhauser enhancement values were measured using standard pulse sequences [68 ], essentially as described for the WT ecRNH protein [15 (link)]. Relaxation parameters were analyzed using FAST-Modelfree [69 (link)] and ModelFree [20 (link)].
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8

Quantification of 7-Methylxanthine by HPLC and NMR

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7-Methylxanthine was identified and quantified using the same HPLC system as described above. A ThermoScientific Hypersil BDS C18 HPLC column (4.6 mm inner diameter x 150 mm length) was used as the stationary phase. A mobile phase of 7.5:92.5:0.5 (vol/vol/vol) methanol-water-acetic acid at a flow rate of 0.5 mL/min. Purity of the 7-methylxanthine was confirmed using HPLC and NMR (Figs. S5 and S6). The NMR results were obtained from the NMR facility in the Chemistry Department of the University of Alabama. The spectrum was recorded in DMSO-d6 with a Bruker DRX 500 NMR spectrometer at 299 K. The chemical shifts were relative to DMSO-d6 using the standard δ notation in parts per million.
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9

Self-Assembly of mCGs Characterized by NMR

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The self-assembly of mCGs was assessed using a Bruker DRX-500 NMR spectrometer equipped with a 5 mm BBO probe. In water, a conventional 1D presaturation pulse sequence with the excitation pulse set over the water peak at 4.7 ppm was used. A standard proton sequence was used for experiments in D2O. Self-assembly studies were performed, for example, using a 10 mM solution of 1 in 650 µL of H2O–D2O (9:1, potassium buffer, 2 M KI). For the NOESY experiment, a phase-sensitive 2D NOESY pulse sequence with presaturation (noesyphpr) from Bruker was used. Sodium 3-(trimethylsilyl)propionate-2,2,3,3-d4 (Aldrich) was used as the internal standard for the NMR experiments performed in H2O/D2O (9:1). All NMR experiments were performed at 298.2 K unless otherwise stated.
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10

Serum Metabolic Profiling via NMR

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600 μL of serum with 70 μL D2O and 1 mM sodium 2-trimethylsilylpropionate (TMSP) was used as internal reference in a 5 mm NMR tube at room temperature and data acquisition was carried out.
For NMR data collection, one-dimensional 1HNMR spectra were acquired on a Bruker DRX-500 NMR spectrometer operating at 500.13 MHZ and Carr-Purcell-Meiboom-Gill (CPMG) 90-(t-180-tn-acqusition) (τ = 200, n = 100) pulse sequence as described earlier.
Analysis of data and pattern recognition were performed using Chenomix 6.4 software.
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