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3 protocols using alexa fluor 700 anti mhcii

1

Multicolor Flow Cytometry Analysis

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Flow cytometry was performed on BAL and lung cells. Cells were incubated for 15 minutes with the CD16/CD32 Fc block antibody and then stained with extracellular antibodies (BD Biosciences unless otherwise stated) for antigen-presenting cells (APC-Cy7-anti-CD45, Alexa Fluor 700-anti-MHCII (eBioscience, San Diego, CA), Pacific Orange-anti-Gr1 (Life Technologies, Burlington, Ontario), APC-anti-CD11c, PECy7-anti-CD11b), NK cells (V450-anti-CD3, PE-anti-NK1.1), and T cells (V450-anti-CD3, APC-Cy7-anti-CD4). Stained cells were analyzed on the LSRII flow cytometer (BD Biosciences) and analyzed using FlowJo software (Tree Star, Ashland, OR). Neutrophils (CD45+CD11b+Gr1+), macrophages (CD45+Gr1-AF+CD11c+), NK cells (CD3-NK1.1+), and CD4+ T cells (CD3+CD4+) were assessed as total number of cells per tissue compartment by multiplying the “frequency of total” of the population by total cell number in the tissue.
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2

Characterizing BMDC Surface Markers

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Twenty-four hours after culture with GM-CSF and/or N-α-Syn stimulation, BMDCs were detached by scraping, washed, and resuspended in 10 μg/ml rat gamma globulin in flow staining buffer (FSB) (0.5% bovine serum albumin (BSA) and 0.1% sodium azide in DPBS) for 40–60 min on ice to block Fc receptors. BMDCs were stained with the following mixture of AlexaFluor 488-anti-CD11c, PECy7-anti-CD11b, PE-anti-Jagged-1, APC-anti-OX40L, AlexaFluor 700-anti-MHC II, eFluor 450-anti-CD86, eFluor 710-anti-CD39 (eBioscience, San Diego, CA) and APC-Vio 770-anti-CD73 (Miltenyi Biotec, Auburn, CA) for 30 min at 4 °C. Cells were washed two times in FSB and were fixed with 1% formaldehyde in DPBS. Samples were analyzed with a BD LSR II flow cytometer and FACSDiva software (BD biosciences, San Jose, CA) at the University of Nebraska Medical Center Flow Cytometry Research Facility. From the single cell-gated population, the percentages of positive for CD11c and CD11b were determined by drawing a gate that comprised 98% of the isotype control as negative. The geometric mean fluorescent intensity (MFI) of each surface marker was determined for CD11c+ cells.
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3

Intracellular Cytokine Detection Protocol

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For intracellular cytokine detection, isolated cells were cultured in 20 μg/ml of M. tuberculosis lysate or PMA/ionomycin for 1.5 h before 10 μg/ml Brefeldin A (eBioscience, USA) was added to the culture for 3.5 h more. For surface staining, lymphocytes were harvested, washed and stained for 30 min on ice with mixtures of fluorescently conjugated mAbs or isotype-matched controls. mAbs of mice were as follows: APC-Cy7-anti-CD3, PE-Cy7-anti-CD4, APC-anti-CD8a, PE-anti-CD45.1, Alexa Fluor 700-anti-CD45.2, PE-anti-CD25, PerCP-cy5.5-anti-CD69, PE-anti-CD44, FITC-anti-CD62L, PE-cy7-anti-Gr-1, PE-anti-CD11b, APC-ant-CD86, Alexa Fluor 700-anti-MHC-II and PerCP-cy5.5-anti-CD206 (eBioscience). For intracellular staining, the cells were incubated 20 min in IC Fixation buffer (eBioscience), followed by permeabilization buffer (eBioscience) and 1 h of incubation with appropriate mAbs of mice: PE-anti-IFN-γ, FITC-anti-IL-17, PerCP-cy5.5-anti-IL-4, FITC-anti-IL-2 and FITC-anti-Foxp3. Cell phenotype was analyzed by flow cytometry on a flow cytometer (BD LSR II) (BD Biosciences, USA). Data were acquired as the fraction of labeled cells within a live-cell gate and analyzed using FlowJo software (Tree Star). All gates were set on the basis of isotype-matched control antibodies.
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