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26 protocols using ab92573

1

HERG Protein Complex Identification

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293 cells expressing HERG in 6-well cell culture plates were harvested at 48 h after transient transfection as aforementioned. Subsequently, the IP/CoIP kit (cat. no. abs955; Absin (Shanghai) Biotechnology Co., Ltd.) was used. After centrifugation at 14,000 × g for 10 min at 4°C, the supernatant was the cell division product. Subsequently, beads (5 µl Protein A and 5 µl Protein G) were added to 500 µl (containing 200-1,000 µg total protein) cell lysate. CNX-HERG, CRT-HERG and ERP57-HERG complexes were immunoprecipitated by incubation with 2 µg antibody against CNX (cat. no. ab92573; Abcam), CRT (cat. no. ab22683; Abcam) and ERP57 (cat. no. ab13506; Abcam), respectively, at 4°C overnight. Furthermore, 5 µl Protein A and 5 µl Protein G were added and mixed gently at 4°C for 1-3 h, then the precipitate was washed with 0.5 ml 1X Wash buffer (from the IP/CoIP kit), centrifuged at 12,000 × g for 1 min at 4°C, and the precipitate was retained. Subsequently, 20-40 µl 1X SDS was added to the precipitate, and the sample was heated to 100°C for 5 min. This was followed by analysis by western blotting and band densities were quantitated using ImageJ.
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2

Extracellular Vesicle Characterization and Validation

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Analysis of the absolute size distribution of ASC-EVs was determined by dynamic light scattering (DLS) using Nanosizer™ instrument (Malvern Instruments, Malvern, UK). EVs were diluted in 1 mL of PBS and injected into the NanoSight NS300 instrument. Particles were automatically tracked and sized based on Brownian motion and the diffusion coefficient. Besides, the EVs were observed under a transmission electron microscope (Hitachi H7500 TEM, Hitachi, Tokyo, Japan) after staining with 1% uranyl acetate. Western blot analysis was further performed to determine the specific surface marker of EV expression, including rabbit antibodies against CD63 (ab216130; 1:2000, Abcam, UK), TSG101 (ab125011; 1:10,000, Abcam), and Calnexin (ab92573; 1:100,000, Abcam).
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3

Immunoblotting of Cytoskeletal Proteins

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Primary antibodies for β-actin (AC-15; Sigma-Aldrich), γ1-actin (2F3; FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan), calnexin (ab92573; Abcam, Cambridge, UK), ICAM-1 (15.2; Leinco Technologies, Inc., St. Louis, MO, USA), ICAM-1 (28; BD Biosciences, San Diego, CA, USA), peroxidase-conjugated anti-mouse IgG(H+L) antibody (Jackson ImmunoResearch Laboratories, West Grove, PA, USA), Alexa® 488-conjugated anti-mouse IgG antibody (Thermo Fisher Scientific), and Alexa® 594-conjugated anti-rabbit IgG antibody (Thermo Fisher Scientific) as secondary antibodies were used in this study.
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4

Isolation and Characterization of Extracellular Vesicles from U87MG Cells

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U87MG cells were cultured in exosome-depleted DMEM (A2720801, GIBCO BRL, Green Island, NY) containing 10% FBS under normoxia (21% O2) or hypoxia (1% O2). After 48–72 h of incubation, the culture medium (30 mL) was collected and centrifuged at 300 × g for 10 min, 2000 × g for 15 min and 12,000 × g for 30 min to remove the floating cells and cell debris, followed by filtering through 0.22-μm filter. The supernatant was subjected to centrifugation at 100,000 × g for 2 h. After PBS wash, another round of ultracentrifugation was performed at 100,000 × g for 2 h. The precipitate was re-suspended in 100 μL PBS and stored at −80 °C for further or immediate use.
Observation of morphological characteristics of EVs was performed under a TEM (JEM-1010; JEOL, Tokyo, Japan). Then, the size was measured using Zetasizer Nano ZS90 instrument (Malvern, UK) with five videos of typically 60 s’ duration taken, and the data was analyzed by Zetasizer software v7.11, Malvern Instruments. The EV surface marker proteins rabbit anti-CD63 (ab134045, 1: 1000, Abcam, Cambridge, UK), rabbit anti-TSG101 (ab125011, 1: 1000, Abcam) and rabbit anti-Calnexin (ab92573, 1: 20000, Abcam) were determined using Western blot analysis.
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5

Exosome Protein Profiling in HepG2 Cells

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RIPA lysate, including a protease inhibitor, was applied to extract the total proteins from treated HepG2 cells or exosomes. After centrifugation at 4°C, the supernatant was taken. After the protein concentration was determined by the BCA method, the total protein (40 μg) in each group was separated by 12% SDS-PAGE electrophoresis and transferred into PVDF membranes. Then the target protein in membrane was sealed with 5% skim milk, and addressed with primary antibodies at 4°C overnight and the corresponding secondary antibodies for 2 h. After the reaction of the ECL reagent (Bio-Rad) for 5 min, the results were obtained by developing imaging in a dark room. And the primary antibodies contained CD63 (1 : 5,000, ab134045, Abcam), CD9 (1 : 2000, ab92726, Abcam), TSG101 (1 : 5,000, ab125011, Abcam), Calnexin-CNX (1 : 20,000, ab92573, Abcam), cleaved caspase-3 (1 : 500, ab32042, Abcam), Cyclin D1 (1 : 10000, ab134175, Abcam), Alix (1 : 1000, ab275377, Abcam), Hrs (1 : 1000, ab155539, Abcam), Rab27A (1 : 3000, ab55667, Abcam), Vps4A (1 : 3000, ab229806, Abcam), BAG5 (1 : 2000, ab97660, Abcam), TRPV6 (1 : 400, 39563, SAB), and GAPDH (1 : 10000, ab8245, Abcam).
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6

Immunofluorescence Staining of Cell Markers

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Sections were incubated overnight at 4°C with primary antibodies; mouse anti-Calnexin (1/1000; EPR3632; ab92573; Abcam), mouse anti-CD31/PECAM (1/500; JC/70A; ab9498; Abcam), rabbit anti-FAM20A (1/250; OACD03385; Aviva), and rabbit anti-Fam20C (1/250; OAAB01003; Aviva). Secondary antibodies used were Cy3-conjugated donkey anti-mouse (Thermo Fisher Scientific; 1:500) and Alexa 488-conjugated donkey anti-rabbit (Jackson Immunoresearch Laboratories, West Grove, PA; 1:500). Helix pomatia agglutinin Alexa 647 (1/1000; Thermo Fisher Scientific) staining was achieved by overnight incubation. Nuclear staining was achieved by 20 min incubation at room temperature in Hoechst 33342 (Thermo Fisher Scientific). No cellular autofluorescence and no nonspecific labeling were detected in these conditions. Images were collected by confocal microscopy (Zeiss LSM8) and processed using ZEN (Zeiss) and ImageJ softwares.
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7

Exosome Isolation and Characterization from BMSC

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Alpha-MEM (Gibco, Green Island) containing 20% FBS (Gibco) was centrifuged for 18 h at 200,000 g to deplete exosomes. BMSCs were cultured in exosome-free medium containing 10% FBS, and BMSCs at passages 4-6 were selected for exosome collection. A total of 2 × 106 MSCs were cultured in 100 mm culture dishes under normal/hypoxic conditions for 72 h, and 10 ml of the supernatant was taken. Exosomes were then isolated from the supernatant after centrifugation16 (link). Then, exosomes were resuspended in PBS.
For identification of exosomes, samples were evaluated under a JEM-2100 transmission electron microscope (TEM; JEOL, Tokyo, Japan). Images were acquired using the PARTICLEMEIRIX system. Nanoparticle tracking analysis (NTA) was performed using the NanoSight NS300 system (Malvern Instruments, Malvern, UK). The Brownian motion of exosomes in PBS was recorded and tracked, and the size distribution was analyzed using the Stokes-Einstein equation. The exosome characteristics were identified by detecting the expression of the exosome-specific surface markers with rabbit anti-CD63 (1:2000, ab216130, Abcam, UK), rabbit anti-TSG101 (1:10,000, ab125011, Abcam), rabbit anti-CD81 (1:10,000, ab109201, Abcam) and rabbit anti-Calnexin (1:100,000, ab92573, Abcam) antibodies by Western blot analysis.
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8

Characterization of Extracellular Vesicles

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EV pellet obtained by ultracentrifugation was fixed in 2% glutaraldehyde overnight at 4℃, washed with PBS, fixed with 1% OsO4 for 1 h, dehydrated in ethanol and embedded using epoxy resin. The embedded material was sectioned using a microtome and saturated with sodium periodate and 0.1N hydrochloric acid. After 10 minutes, the size and morphological characteristics of EV were examined with the use of a TEM (JEM‐1010, JEOL, Tokyo, Japan). The EV suspension was mixed with an equal volume of 4% paraformaldehyde and deposited on a Formvar carbon‐coated EM grid. Images were acquired using a TEM (Hitachi, Tokyo, Japan). Western blot analysis was applied to identify the EV surface marker proteins of rabbit anti‐CD63 (ab134045, 1:1000, Abcam, Cambridge, UK), rabbit anti‐CD81 (ab109201, 1:5000, Abcam), and rabbit anti‐Calnexin (ab92573, 1:20 000, Abcam).
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9

Protein Extraction and Western Blot Analysis

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The total tissue or cell proteins were lysed in RIPA lysate (R0010, Solarbio) in
strict accordance with the instructions, and then centrifuged at 4°C for 15 min.
Next, the lysates were quantified by a BCA kit (20201ES76, Yeasen Biotechnology
Co., Ltd., Shanghai, China). The protein sample was separated using freshly
prepared sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE),
electrotransferred onto PVDF membranes, blocked by 5% BSA for 1 h, and probed
with primary antibodies overnight at 4°C. Immunoblots were visualized with
HRP-conjugated secondary antibody IgG (ab205718, 1:10,000, Abcam) and enhanced
chemiluminescence detection reagents and captured under the Vilber FUSION FX5
(Vilber Lourmat, France). Gray value of target protein bands was quantified
using Image J software, with Actin used for normalization. Used primary
antibodies were TET1 (ab191698, 1:1000, Abcam), KLF4 (ab215036, 1:1000, Abcam),
CD63 (ab217345, 1:1000, Abcam), TSG101 (ab125011, 1:1000, Abcam), Calneixin
(ab92573, 1:1000, Abcam), and β-actin (ab179467, 1:1000, Abcam).
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10

Exosomal Protein Expression Analysis

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The cells or exosomes were lysed, and the isolated proteins were denatured in loading buffer after concentration detection. The separation of proteins was carried out by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) electrophoresis and then transferred to the polyvinylidene fluoride (PVDF) membranes (Millipore, Bedford, MA, USA). The membranes were blocked and incubated with antibodies containing anti-CD63 (ab134045, 1:2000, Abcam, Cambridge, MA, USA), anti-CD81 (ab109201, 1:2000, Abcam), anti-TSG101 (ab125011, 1:3000, Abcam), anti-Calnexin (ab92573, 1:20000, Abcam), anti-FOXO1 (ab179450, 1:2000, Abcam) and anti-GAPDH (ab9485, 1:2500, Abcam) antibodies at 4°C overnight. After washing with TBST, the membranes were incubated with secondary antibody goat anti-rabbit IgG (ab6721, 1:5000, Abcam) for 2 h. Subsequently, the bands were visualized by the enhanced chemiluminescence (ECL) reagent (Millipore).
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