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Minicube

Manufactured by Doric
Sourced in Canada

The Minicube is a compact laboratory equipment designed for a variety of applications. It functions as a controlled environment for experiments and testing.

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5 protocols using minicube

1

Fiber Photometry System for Calcium Imaging

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The fiber photometry system used LEDs to deliver 405 nm and 473 nm light. These light streams were sinusoidally modulated at 211 Hz and 531 Hz respectively, combined into a minicube (Doric Lenses, Quebec, Canada), and coupled to an optical patch cord (400 μm; Doric Lenses). The optical patch cord was connected to the animal using a zirconia sleeve (2.5 mm; Doric Lenses). Emitted fluorescence was received through the same optical patch cord and collected by a femtowatt photodetector (New Focus 2151, Newport Corporation, Irvine, CA). This signal was processed using Doric Photometry Software. Photometry data analysis and statistical tests were performed using custom code in MATLAB (MathWorks, Natick, MA). Data were collected at 12 kHz, and low-pass filtered at 12 Hz. The calcium activity-independent 405 nm reference channel was fit to the calcium activity-dependent 473 nm channel using linear least squares. Relative fluorescence changes, reported as ΔF/F, were calculated using the following equation:
ΔFF=473 nm signalfitted 405 nm signalmean 473 nm signal×100
Mean ΔF/F before and after an event or behavior was calculated by calculating the mean signal in a 5 s window pre- and post-timepoint.
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2

Fiber Photometry for In Vivo Recordings

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Fiber optic cables (1m, 400μm core, 0.48 NA; Doric Lenses) were coupled to implanted optic fibers with zirconia or bronze sleeves (Doric Lenses). Excitation and emission light was passed through a fluorescence minicube (FMC6_AE(405)_E1(465–480)_F1(500–540)_E2(555–570)_F2(580–680)_S, Doric Lenses). Excitation light (~100 μW) was provided by 405nm and 465nm LEDs (Doric) modulated at 531 or 211 Hz using an RZ5P fiber photometry processor (Tucker-Davis Technologies, TDT) running Synapse, and emission light collected via fluorescence photodetector heads integrated into the minicube (Doric Lenses). Signals were demodulated, digitized at 1 kHz, and acquired via the RZ5P processor. Transistor–transistor logic (TTL) time stamps were used to align the signal, video frames, and experimental stimuli. Photometry recordings were done between 4 and 8 weeks following viral vector injection.
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3

Fiber Photometry for In Vivo Recordings

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Fiber optic cables (1m, 400μm core, 0.48 NA; Doric Lenses) were coupled to implanted optic fibers with zirconia or bronze sleeves (Doric Lenses). Excitation and emission light was passed through a fluorescence minicube (FMC6_AE(405)_E1(465–480)_F1(500–540)_E2(555–570)_F2(580–680)_S, Doric Lenses). Excitation light (~100 μW) was provided by 405nm and 465nm LEDs (Doric) modulated at 531 or 211 Hz using an RZ5P fiber photometry processor (Tucker-Davis Technologies, TDT) running Synapse, and emission light collected via fluorescence photodetector heads integrated into the minicube (Doric Lenses). Signals were demodulated, digitized at 1 kHz, and acquired via the RZ5P processor. Transistor–transistor logic (TTL) time stamps were used to align the signal, video frames, and experimental stimuli. Photometry recordings were done between 4 and 8 weeks following viral vector injection.
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4

In-Vivo Fiber Photometry Recordings in Mice

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We anesthetized animals using 2% isoflurane and placed them in a stereotaxic frame. Mice were implanted with a fiber optic probe (400 μM diameter, 0.39NA; RWD Life Sciences) in the PBN (−5.2mm AP, +1.5mm ML, −2.2 to −2.5mm DV) during the same surgery they were injected with the viral construct and the head plate was implanted. The mice were given 3 weeks to recover and to allow for viral expression in their home cage.
For recordings, the fiber optic probe was connected to an RZX10 LUX fiber photometry processor running Synapse software (Tucker-Davis Technologies) through a Doric mini cube (Doric Lenses). LEDs at 465 nm and 405 nm were used for GCaMP excitation and isosbestic control, respectively. LED power was calibrated weekly using a digital optical power meter (Thor Labs).
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5

Fiber Photometry Recordings in Mouse Parabrachial Nucleus

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Mice were anesthetized with an intraperitoneal injection of 2 mg/kg urethane, placed on a stereotaxic frame and a fiber optic probe (400 μm diameter, 0.39 NA; RWD Life Sciences) was placed in the right PB at the same coordinates used for NE2h injection (−5.2 mm AP, +1.5 mm ML, −2.2 to −2.5 mm DV). The fiber optic probe was connected to a RZX10 LUX fiber photometry processor running Synapse software (Tucker-Davis Technologies) through a Doric mini cube (Doric Lenses). LEDs at 465 nm (30 μW) and 405 nm (10 μW) were used for NE2h excitation and isosbestic control respectively. LED power was verified and calibrated as needed using a digital optical power meter (Thor Labs). The probes caused minimal tissue damage which was undetectable below the superficial inferior colliculus. Where present, we used this superficial damage to verify our recordings were in the correct rostrocaudal and mediolateral planes above PB.
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