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27 protocols using sphingosine

1

Preparation of Sphingosine Micelles

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Sphingosine (Avanti Polar Lipids, #860490P) was resuspended in 7.5% n-octyl-β-D-glucopyranoside (OGP) at 20 mM concentration, sonicated to obtain a suspension and promote the formation of micelles, and stored at −20 °C. Before each experiment, Sphingosine was sonicated (Bandelin Sonorex) for 10 min and diluted in 0.9% NaCl to 1 μM or 10 μM Sphingosine.
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2

Sphingolipid Separation and Identification

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To resolve SL species, lipid extracts were spotted on non-fluorescent 20 × 20 cm glass backed silica plates (Millipore Sigma) and separated using a 65:25:4 Chloroform: Methanol: Ammonium Hydroxide solvent system for 25 min. A standard composed of sphingosine (d18:1), ceramide (d18:1/12:0), and sphingomyelin (d18:1/12:0) (Avanti Polar Lipids) was used to identify spots. All plates were developed in an iodine chamber overnight, with the exception of FS2C, which was imaged with primuline (0.01 mg/mL in 4:1 v/v acetone:dH2O) under trans-UV.
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3

Lipidomic Profiling of Ovarian Cancer

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Human ovarian cancer cell line (A2780) and its taxol-resistant strain (A2780T) were purchased from KeyGen Biotech Co., Ltd. (Nanjing, China). The LIPID MAPS internal standard (IS) cocktail in ethanol, composed of 25 μM each of nine sphingolipid standards including SM (d18:1/12:0), Cer (d18:1/12:0), C1P (d18:1/12:0), HexCer (d18:1/12:0), LacCer (d18:1/12:0), Sphinganine (d17:0), Sphingosine (d17:1), Sphinganine-1-Phosphate (d17:0) and Sphingosine-1-Phosphae (d17:1), was purchased from Avanti Polar Lipids (Alabaster, AL, USA). HPLC-grade methanol (MeOH), chloroform (CHCl3) and isopropanol (IPA) were purchased from Merck (Darmstadt, Germany). Ammonium acetate (NH4OAc), potassium hydroxide (KOH), acetic acid (CH3COOH) and formic acid (HCOOH) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Dulbecco’s Modified Eagle’s Medium (DMEM), Roswell Park Memorial Institute (RPMI) 1640 medium, Fetal Bovine Serum (FBS), Penicillin-Streptomycin (PS) were purchased from Gibco, New Zealand. Sodium dodecyl sulfate (SDS) and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were purchased from Acros, USA.
A pooled sample equally aliquoted from all samples can provide the most comprehensive information within a specific study. Hence, equivalent amount of A2780T was spiked into A2780 to prepare a pooled quality control (QC) sample.
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4

SPL Internal Standard Cocktail

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The internal standard (IS) cocktail (LM-6005) consisting of 25 µM each of nine uncommon SPLs in ethanol including Sphinganine (d17:0), Sphingosine (d17:1), Sphinganine-1-Phosphate (d17:0) and Sphingosine-1-Phosphate (d17:1), Ceramide (d18:1/12:0), Ceramide (d18:1/25:0), Ceramide-1-Phosphate (d18:1/12:0), Hexosyl Ceramide (d18:1/12:0), Lactosyl Ceramide (d18:1/12:0) and Sphingomyelin (d18:1/12:0) was purchased from Avanti Polar Lipids (Alabaster, AL). Ammonium formate (NH4HCO2), potassium hydroxide (KOH), acetic acid (CH3COOH) and formic acid (HCOOH) were purchased from Sigma-Aldrich (St. Louis, MO, USA). LC-MS-grade chloroform (CHCl3), methanol (CH3OH) and isopropanol (IPA) were purchased from Merck (Darmstadt, Germany). All other chemicals used were of analytical grade.
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5

Analytical Reagents and Standards

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The salts and supplements used to prepare the culture media were in general purchased from Sigma-Aldrich; except Dichloran-glycerol (DG18) agar, yeast extract and bacteriological peptone that were purchased from Oxoid; sucrose from Alfa Aesar; casein hydrolysate from Fluka; agar and NaCl from Panreac AppliChem; NaOH from J.M.G. Santos and glycerol from Fisher Bioreagents. Molecular biology reagents used for PCR reactions were purchased from NZYTech. 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) was purchased from Sigma-Aldrich. The reagents used for sphingolipid extraction: pyridine, butanol, ammonium hydroxide and 40% methylamine in water were purchased from Acros Organics; ethanol, methanol and chloroform (and dimethyl sulfoxide used in MTT assays) were purchased from Fisher Chemical and diethylether from Panreac AppliChem. Sphingoid bases standards (phytosphingosine, sphingosine and dihydrosphingosine) were purchased from Avanti Polar Lipids. All solvents used in chromatographic analyses were of the highest analytical grade and water was obtained from a Milli-Q system (Millipore).
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6

Lipid Composition Analysis

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Cholesterol, diarachidoyl-sn-glycero-3-phosphocholine (DAPC), sphingosine, lactosylceramide (C-16), and PEG750-ceramide (C-16) were obtained from Avanti Polar Lipids (Alabaster, AL).
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7

Quantification of Fungal Sphingolipids

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Conidia (500 μl, 1 × 106 spores/ml) from either the WT or a specific mutant were cultured for 3 days in M3S liquid medium at 150 rpm. The total sphingolipids were extracted from 1 g of mycelial powder via ultrasonic extraction in 10 mL of isopropanol:water:ethyl acetate (30:10:60, by vol) for 10 min in a water bath at 60°C; 100 μl of 1 μM C12 Glucosylceramide (d18:1/12:0), Sphingosine (d17:1) and C12 Ceramide (d18:1/12:0) (Avanti Polar Lipids, Alabama, United States) was added as an internal standard for idenfication of GlcCer, LCB, and ceramides, respectively. After centrifugation at 5000 rpm for 10 min, the upper phase containing GlcCer was dried using nitrogen and then dissolved in 500 μl methanol. The samples were injected into a Shimadzu UFLC-XR coupled with a hybrid quadrupole time-of- flight mass spectrometer (AB SCIEX Triple TOF 5600+)and gradient-eluted from a Phenomenex Luna C8 column (150 mm × 2.0 mm, 3 μm). The peaks corresponding to the target analytics and internal standards were collected and processed using the software MultiQuant (AB SCIEX). The components of the sphingolipids were determined as previously described (Markham and Jaworski, 2007 (link)).
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8

Sphingosine Inhibits SARS-CoV-2 Infection

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Human nasal epithelial cells were obtained from healthy volunteers by nasal brushings with a small brush. The cells were suspended immediately in HEPES/saline (H/S; 132 mm NaCl, 20 mm HEPES, pH 7.4, 5 mm KCl, 1 mm CaCl2, 0.7 mm MgCl2, 0.8 mm MgSO4), washed once, and resuspended in H/S. The cells were treated with 0.25, 0.5, 1, 2, or 5 μm sphingosine (Avanti Polar Lipids, catalog no. 860490) or left untreated for 30 min, pelleted, and resuspended in minimum essential medium (MEM) supplemented with 10% FCS containing pp-VSV–SARS–CoV-2 spike and the same concentration of sphingosine as used in the preincubation period. The cells were then infected for 60 min, washed once in H/S, and cultured for 24 h in minimum Eagle's medium supplemented with 10% FCS to allow expression of the eGFP encoded by the particles. Infection was analyzed on a Leica TCS-SP5 confocal microscope by counting the percentage of eGFP-positive epithelial cells in at least 500 epithelial cells per sample in randomly chosen microscopic fields.
The local ethics committee of the University Hospital Essen approved the experiments under permission number 20-9348-BO. The studies were performed in accordance with the Declaration of Helsinki principles.
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9

Lipid Standards for Mass Spectrometry

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Both 2,5-dihydroxylbenzoic
acid (DHB, > 99%) and N-naphthylethylenediamine
dihydrochloride
(NEDC) were purchased from Sigma-Aldrich (St. Louis, MO). Methanol
(MeOH), isopropanol (IPA), chloroform, and acetonitrile (ACN) were
HPLC-grade (Merck, Darmstadt, Germany). PC (19:0/19:0), LPC (19:0/19:0),
TG (15:0/15:0/15:0), Ceramide (Cer) (d18:1–17:0), SM (d18:1/12:0),
and sphingosine (d17:1) were acquired from Avanti Polar Lipids. TG
(15:0/15:0/15:0) was provided by Sigma-Aldrich (St. Louis, MO).
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10

Lipid Quantification Protocol

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Ceramides (C14:0, C16:0, C18:0, C18:1, C20:0, C24:0, C24:1 Ceramides), dihydroCeramides (C16:0, C18:0, C24:0, C24:1), sphinganine, sphingosine, sphingomyelins (SM; 16:0, C18:0, C18:1), and DAG (C16:0–C16:0, C18:1–C18:1, C16:0–C18:1, C18:0–C18:2, C18:0–C20:4) were obtained from Avanti Polar Lipids (Alabaster, AL, USA). Insulin was obtained from Eli Lilly and Company (Indianapolis, IN, USA).
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