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9 protocols using rh pe

1

Fluorescent Labeling of Lipids and Carbohydrates in Cream

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The fluorescent dye 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-(lissamine rhodamine B sulfonyl) (Rh-PE, Avanti Polar lipids Inc., Birmingham, UK) was made up to 1 mg/mL in chloroform and used to label the phospholipids by adding 50 µL of the solution to 1 mL of cream. Emission was collected in the range 570–625 nm.
Wheat Germ Agglutinin Alexa Fluor 488 (WGA, Cergy Pontoise, France) was made up to 1 mg/mL in low salt TBS (20 mM Tris-HCl, 100 mM NaCl, 1 mM CaCl2, 1 mM MgCl2, pH 7.2) and used to label and locate carbohydrate moieties. Fifty µL of solution was added to 1 mL of cream. Emission was collected in the range 490–550 nm. For samples single and dual stained with Rh-PE and WGA, samples were kept at room temperature in the dark for a minimum of 6 h before analysis. 0.5% (w/w) low melting point agarose (held at 45 °C until required) (Thermofisher Scientific, Waltham, MA USA) was added to all single and dual stained samples before imaging 10 µL of sample and 20 µL of the agarose were deposited onto slides and mixed gently before a coverslip was added. A 63x oil immersion objective was used to acquire images taken at 1024 × 1024 pixels.
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2

Formation of Giant Unilamellar Vesicles

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Chloroform stock solutions of 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC, Avanti Polar Lipids), 1,2-dioleoyl-sn-glycero-3-phospho-L-serine (DOPS, Avanti Polar Lipids), and cholesterol (Sigma) were mixed at a final lipid concentration of 0.25 mM and labeled with 0.1% Rhodamine-PE (RH-PE, Avanti Polar Lipids). GUVs were grown on ITO slides (Nanion Technologies) by gently spreading 30 μL of the lipid solution and evaporating the solvent by an argon stream, followed by desiccation under a mild vacuum for at least 2 h. GUVs were then grown by electroformation in 275 mL of 300 mM sucrose solution using a Vesicle Prep Pro instrument (Nanion Technologies). First, the electroformation voltage was increased stepwise to 3 V, 15 Hz) and applied at 55 °C for 2 h, followed by a slow decrease of voltage and frequency (see SI Appendix B, Figure S1).
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3

Lipid Reconstitution Protocol

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Sulfo-DIBMA was obtained from Glycon Biochemicals (Luckenwalde, Germany). DMPC was a kind gift from Lipoid (Ludwigshafen, Germany). NBD-PE and Rh-PE were purchased from Avanti Polar Lipids (Alabaster, USA). Tris(hydroxymethyl)aminomethane (Tris), NaOH, NaCl, HCl, MgCl2, CaCl2, and CHCl3 were purchased from Carl Roth (Karlsruhe, Germany) and Sigma–Aldrich (Steinheim, Germany). All chemicals were purchased in the highest purity available.
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4

Preparation of Supported Lipid Bilayers

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A mixture of dioleoylphosphatidylcholine (DOPC), egg PA, dioleoylphosphatidylserine, and Rh-PE (Avanti Polar Lipids) in the ratios of 89.5:10:0:0.5 mol% for PA SLB, 99.5:0:0:0.5 mol% for PC SLB, and 89.5:0:10:0.5 mol% for PS SLB lipids was aliquoted in a glass test tube (final concentration, 3 mM) and mixed gently. This chloroform-dissolved lipid mix was dried rapidly under a nitrogen stream and vacuum desiccated for 60 min. The dried lipid film was hydrated in 1× PBS at 50 °C for 30 min. After incubation, the hydrated liposomes were vigorously vortexed for 5 min. The hydrated liposomes were sonicated using a probe sonicator for 5 min at 4 °C to make small unilamellar vesicles (SUVs; Branson SFX250 Sonifier; 15% amplitude, 3-s on and 2-s off cycle). The sample was centrifuged at 20,000g for 10 min, 4 °C to remove large unilamellar vesicles and titanium particles (eroded from the probe).
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5

Reconstituting Biomolecular Complexes In Vitro

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Poloxamer 188 (P188), 1-octanol, glycerol,
poly(vinyl alcohol) (PVA, MW 30–70 kDa, 87–90% hydrolyzed),
KCl, NaCl, MgCl2, NaOH, HCl, Tris-HCl, trisodium citrate,
EDTA, glucose, dextran (MW 6 kDa), (FITC)-pLL hydrobromide (MW 15–30
kDa), ATP disodium salt, UDP disodium salt, PNPase (polynucleotide
phosphorylase from Synechocystis Sp.), and spermine tetrahydrochloride
were purchased from Sigma-Aldrich. sTG and 5′ cy5-U20 were gifted by Rikiya Watanabe (Molecular Physiology Laboratory,
RIKEN, Saitama, Japan) and Marileen Dogterom (Kavli Institute of Nanoscience
Delft), respectively. DOPC (1,2-dioleoyl-sn-glycero-3-phosphocholine),
PIP3 (1,2-dioleoyl-sn-glycero-3-phospho-(1′-myoinositol-3′,4′,5′-trisphosphate)
(ammonium salt)), and Rh-PE (1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-(lissamine rhodamine B sulfonyl) (ammonium salt)) were
purchased from Avanti Polar Lipids. Microfluidic devices were prepared
from the materials provided in the SYLGARD 184 silicone elastomer
kit purchased from Dow Corning. 5′-Cholesterol-U20 was purchased from biomers.net GmbH. pH paper used was bought from
Carl Roth, Art. H913.2.
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6

Fluorescent Giant Unilamellar Vesicle Formation

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The lipid DPPC and red fluorescent lipid marker Rh-PE were purchased from Avanti Polar Lipids (Alabaster, Alabama, USA) and used without further purification. GUVs were prepared by a modified electroformation method.[64 , 44 ] With chloroform as a solvent, the DPPC was mixed with one of the BPs at 10:1 molar ratio by adding 0.5 mol % of Rh-PE as a red counterstain. The total concentration was 15 mg mL−1. The mixture (15 μL) was spread on optically transparent indium tin oxide (ITO) coverslips (Gesim GmbH, Grosserkmannsdorf, Germany) preheated to 60 °C. The coverslips were assembled in a capacitor-type configuration by using a home-built perfusion chamber with 2 mm spacers. The chamber was filled with deionized water and an alternating sinusoidal voltage (1.3 V effective voltage, 10 Hz) was applied for 4 h at 60 °C. Prior to confocal microscopy, the perfusion chamber was allowed to cool to room temperature (22 °C).
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7

Preparation of Large Unilamellar Vesicles

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All lipids (dioleoyl phosphatidylcholine, DOPC: dioleoyl phosphatidylserine, DOPS; TopFluorPE; RhPE, TopFluorPC, and TopFluo TMR PC) were purchased from Avanti Polar Lipids. Large unilamellar vesicles (LUVs) were prepared by extrusion. In brief, lipids dissolved in benzene/methanol (95:5, vol:vol) were freeze-dried under high vacuum overnight and the dried lipid powder was hydrated at room temperature in a buffer containing 100 mM NaCl, 10 mM Hepes, 5 mM EDTA, pH 7.0 and vortexed. The resulting lipid suspension was submitted to 10 successive cycles of freezing and thawing by successively immersing the vial containing the lipid suspension into liquid nitrogen and a warm water bath. Thereafter the lipid suspension was extruded 10 times through two stacked polycarbonate filters of 100 nm pore-size (Nucleopore, Whatman) using a LIPEX extruder (Northern Lipids Inc., Burnaby, Canada) to produce large unilamellar vesicles.
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8

Lipid-based Fluorescent Staining Reagents

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Reagents DOPC, DOPE, Rh-PE, FITC-PE were purchased from Avanti Polar Lipids (Alabaster, AL, USA), and LysoTracker Green DND-26 and Hoechst 33342 were purchased from Molecular Probes Inc. (Eugene, OR, USA). Filipin, EIPA, and lysozyme were obtained from Sigma Aldrich (St Louis, MO, USA). Chloropromazine was obtained from Nacalai Tesque (Kyoto, Japan). Bradford Ultra was purchased from Expedeon Ltd (Cambridge, UK), and Sephadex G25 was obtained from GE Healthcare Bioscience Corp. (Piscataway, NJ, USA).
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9

Formation of Giant Unilamellar Vesicles

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Chloroform stock solutions of 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC, Avanti Polar Lipids), 1,2-dioleoyl-sn-glycero-3-phospho-L-serine (DOPS, Avanti Polar Lipids), and cholesterol (Sigma) were mixed at a final lipid concentration of 0.25 mM and labeled with 0.1% Rhodamine-PE (RH-PE, Avanti Polar Lipids). GUVs were grown on ITO slides (Nanion Technologies) by gently spreading 30 μL of the lipid solution and evaporating the solvent by an argon stream, followed by desiccation under a mild vacuum for at least 2 h. GUVs were then grown by electroformation in 275 mL of 300 mM sucrose solution using a Vesicle Prep Pro instrument (Nanion Technologies). First, the electroformation voltage was increased stepwise to 3 V, 15 Hz) and applied at 55 °C for 2 h, followed by a slow decrease of voltage and frequency (see SI Appendix B, Figure S1).
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