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6 protocols using 5 bromo 4 chloro 3 indolyl phosphate bcip

1

Recombinant Protein Adsorption and Detection

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Recombinant proteins at a concentration of 1.5 mg/mL in 1 µL were adsorbed onto a nitrocellulose membrane. Next, the membranes were cultured in a blocking buffer containing PBS, 0.1% Tween-20 with 1% BSA. After washing three times with PBS + 0.1%, Tween-20 10H10 mAb 2 μg/mL in blocking buffer was added and incubated for 10 min. After incubation, membranes were washed three times and incubated for 10 min with goat anti-Mouse IgG polyclonal antibody 0.25 μg/mL conjugated with alkaline phosphatase (BioRad, Berkeley, CA, USA). After washing 3 times, membranes were incubated for 5 min with an aqueous solution of 5-bromo-4-chloro-3-indolyl phosphate (BCIP) and nitrosinetetrazole (NTB) (Invitrogen, Waltham, MA, USA). The enzymatic reaction was stopped by washing with distilled water.
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2

Alkaline Phosphatase Staining Protocol

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Alkaline phosphatase staining was performed as described previously70 (link). In brief, tissues were fixed as described above and incubated at 68 °C for 90 min to inactivate endogenous alkaline phosphatase activity. Subsequently, tissues were washed twice (10 min each in AP prestaining buffer (0.1 M Tris, 0.1 M NaCl, 50 mM MgCl2, pH 9.5) prior to incubation with AP staining buffer (prestaining buffer supplemented with 0.34 g/ml nitroblue tetrazolium (NBT) and 0.175 g/ml 5-bromo-4-chloro-3-indolyl-phosphate (BCIP) (Invitrogen). Alkaline phosphatase staining reaction proceeded o/n at RT. After staining, tissues were washed three times for 20 min in PBS, 0.1% Tween 20 and postfixed in PBS with 4% paraformaldehyde o/n. After washes with PBS, samples were dehydrated through an ethanol series and then cleared with 2:1 benzyl benzoate (BB)/benzyl alcohol (BA). Images were acquired using a Zeiss Axioscope 2.
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3

SNO Quantification in AD Mice Brains

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Brain tissues from WT (N = 4) and AD (N = 4) mice were homogenized with the presence of NEM and incubated with 5% SDS for 0.5 h at room temperature. BCA assay was used to determine protein concentrations. An aliquot of 250 μL PBS containing 0.5 μg protein was loaded onto a nitrocellulose membrane with a slot blot apparatus (Bio-Rad). The membranes were blocked with 3% (w/v) BSA solution and 5 mM NEM overnight at 4°C and incubated with a 1:2500 dilution of anti-SNO antibody produced by mouse (Sigma) for 2 hours. After rinsing the membrane, anti-mouse IgG alkaline phosphatase secondary antibody (Sigma) was added with the dilution factor 1:5000 and incubated with the membrane for 1 hour. The membrane was washed in wash blot (PBS with 0.1% Tween 20) and developed using 5-bromo-4-chloro-3-indolyl phosphate (BCIP) (Thermo Fisher)/nitro blue tetrazolium chloride (NBT) (Sigma) colorimetric development. The blot was dried, scanned and slot profiles quantified using Scion Image. Statistical testing (student’s t-test) was performed in Origin 8.0. The entire experiment was repeated twice.
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4

Western Blot Analysis Protocol

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Cell lysates were boiled in 1× Laemmli sample buffer for 5 min, and then electrophoresed on 4–20% Tris-Glycine eXtended (TGX) precast protein gels (Biorad). Proteins were transferred to 0.2 μm polyvinylidene difluoride (PVDF) membranes by using a Trans-Blot Turbo Transfer System (Biorad). The membranes were blocked for 30 min in 5% non-fat milk, and then incubated for 2 hours at room temperature or overnight at 4 °C with a primary antibody. After 3 times of 5-min wash with TBST, the membranes were immunoblotted with alkaline phosphatase (AP) conjugated goat-anti-rabbit IgG or goat-anti-mouse IgG secondary antibody (Promega) for 1 hour at room temperature. After 3 times of 5-min wash with TBST, blots were developed using 5-Bromo-4-chloro-3-indolyl phosphate (BCIP, ThermoFisher) and Nitro blue tetrazolium (NBT, ThermoFisher) as substrates. The blots were then imaged on a ChemiDoc Imaging System (Biorad) and the bands on blots were quantified by ImageJ (Open source Java program from NIH) or the immunoblotting quantification software Image Studio™ Lite (LI-COR Biosciences).
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5

Quantification and Verification of Recombinant Proteins

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The rSUB, rFER2, and rP0 proteins were verified by SDS-PAGE in a 16% gel under a reduced condition and quantified using a Nano-Drop spectrometer (Nano-Q; OPTIZEN). For Western blot [45 (link)], 5 µg of protein sample was mixed with 15 µl loading buffer (5% SDS, 5% Tris [pH 6.8], 0.2% bromophenol blue and 20% glycerol) and heated at 100 °C for 10 min. Each protein sample (20 µl), protein marker (5 µl; Bio-Rad Laboratories) and BSA standard (5 µl) were gel-electrophoresed at 100 V for 20 min in stacking gel and 150 V for 1 h in running gel, at 4 °C. The protein samples were then transferred to a nitrocellulose membrane in 12 mM carbonate buffer (pH 9.9) at 70 V for 1 h at 4 °C. The membranes were blocked with blocking buffer (1× PBS containing 5% skim milk) and incubated with shaking at room temperature (RT) for 1 h, followed by 3 washes with the same buffer. The membranes were then treated with 1:1000 dilution of rabbit-anti-His monoclonal antibodies (GenScript). Detection was performed in alkaline phosphatase buffer (100 mM Tris–HCl, 100 mM NaCl, 5 mM MgCl2) with the addition of 0.3 mg/ml nitro blue tetrazolium (NBT; Thermo Fisher Scientific) and 0.15 mg/ml 5-bromo-4-chloro-3-indolyl phosphate (BCIP; Thermo Fisher Scientific) [16 (link)].
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6

Western Blot Analysis Protocol

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Cell lysates were boiled in 1× Laemmli sample buffer for 5 min, and then electrophoresed on 4–20% Tris-Glycine eXtended (TGX) precast protein gels (Biorad). Proteins were transferred to 0.2 μm polyvinylidene difluoride (PVDF) membranes by using a Trans-Blot Turbo Transfer System (Biorad). The membranes were blocked for 30 min in 5% non-fat milk, and then incubated for 2 hours at room temperature or overnight at 4 °C with a primary antibody. After 3 times of 5-min wash with TBST, the membranes were immunoblotted with alkaline phosphatase (AP) conjugated goat-anti-rabbit IgG or goat-anti-mouse IgG secondary antibody (Promega) for 1 hour at room temperature. After 3 times of 5-min wash with TBST, blots were developed using 5-Bromo-4-chloro-3-indolyl phosphate (BCIP, ThermoFisher) and Nitro blue tetrazolium (NBT, ThermoFisher) as substrates. The blots were then imaged on a ChemiDoc Imaging System (Biorad) and the bands on blots were quantified by ImageJ (Open source Java program from NIH) or the immunoblotting quantification software Image Studio™ Lite (LI-COR Biosciences).
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