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92 protocols using bi2536

1

Modulating Glioblastoma Stem Cells via PLK1 Inhibition

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CD133+ U87 stem cells and CD133+ U251 stem cells were assigned to Blank group, control group, PLK1 inhibitor BI2536 group (treated with 0.5 nmol/L BI2536, Selleck Chemicals, Houston, TX), PLK1 inhibitor Volasertib group (treated with 0.5 nmol/L Volasertib, Selleck Chemicals), pcDNA3.1 group, pcDNA3.1‐PLK1 group (cells transfected with PLK1‐pcDNA3.1), si‐NC group, PLK1‐siRNA1 group (cells transfected with PLK1‐specific siRNA1) and PLK1‐siRNA2 group (cells transfected with PLK1‐specific siRNA2). The sequence of PLK1 siRNA is listed in Table 1. The oligonucleotides were purchased from Gene PharmaCo., Ltd. (Shanghai, China). U87 and U251 stem cells were plated in antibiotic‐free medium. Then, the medium was changed to serum‐free Opti‐MEM. Transfection was performed under the guidelines of Lipofectamine 2000 (Invitrogen Inc.).
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2

Prostate Cancer Cell Line Authentication and Manipulation

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All the cell lines were authenticated. RWPE-1, LNCaP and PC3 cells were purchased from ATCC and were maintained in keratinocyte serum–free medium (KSFM for RWPE1) or RPMI medium (for LNCaP, PC3) with 10 % FBS in a humidified 37°C incubator with 5% CO2. RWPE-Neo, Pim1, diploid and polyploid cells have been described in previous papers (21 (link), 23 (link), 24 (link)). LNCaP-Neo/Pim1, PC3-Neo/Pim1 cells has also been described previously (23 (link)). NHPrE cells were maintained in F12/DMEM medium as described (25 (link)). To establish PLK1 knock-down cells, lentiviral PLK1 shRNAmir and control shRNAmir (Open Biosystems) were transduced into LNCaP-Neo/Pim1 and PC3-Neo/Pim1 cells and stable clones were selected by using 1–2 ug/ml puromycin. For BI 2536 (Selleckchem) treatment, different dose of BI 2536 (10 nM −100 nM) were added to the cells and cell lysates were prepared 24 hrs later.
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3

Synchronizing Cells for Centriole Cycle Studies

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To avoid potential unspecific effects of the drugs conventionally used for cell synchronization on the centriole cycle, cells were synchronized exclusively by mitotic shake off. Mitotic cells were collected by gently tapping on the tissue culture flasks containing logarithmically growing cells and replated on the coverslip or in the fresh dish, according to the needs of a particular experiment. One hour after replating entire culture was synchronously in G1. These cells were then either cultured without any further treatment and analysed at appropriate time points, or treated with 2 mM HU (Sigma) to induce S-phase arrest, or with 9 μM Cdk1 inhibitor RO-3306 (Tocris Biosciences) to induce G2 arrest10 (link). Plk1 inhibitor BI2536 (200 nM)39 (link) (Selleckchem) was added to some samples to inhibit endogenous Plk1 activity, when needed. If left untreated, G1 cells progress synchronously through the cell cycle allowing unambiguous determination of the cell cycle phase. Examination of the cells under bright light by differential interference contrast microscopy was used to select cells in a particular phase of mitosis for further imaging or fixation, as illustrated in Supplementary Fig. 7.
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4

Investigating Notch Signaling Pathway

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Antibodies beta-actin (A2066; Sigma-Aldrich), cleaved Notch2 (C651.6DbHN; Developmental Studies Hybridoma Bank, University of Iowa, Iowa City, IA), HES1 (ab71559; AbCam, Cambridge, MA; TA500014, Origene, Rockville, MD), Notch-1, −3, and-4(ab52627, ab23426, and ab184742, Abcam), Jagged1 (sc11376; Santa Cruz Biotechnology), DLL1 (sc73899; Santa Cruz Biotechnology), p53 (DO1; Santa Cruz Biotechnology), FITC anti-p53 antibody (645803; Biolegend, San Diego, CA), PLK1 (50-171-861; Millipore, Billerica, MA), CHFR (H00055743-M01; Abnova, Taipei, Taiwan), PAR (4335-MC-100-AC; Trevigen, Gaithersburg, MD), MDM2 (OP115; Millipore), pMDM2(ser260) (orb129684; Biorbyt LLC, San Francisco, CA) (Bioworld Technology, Inc., St Louis Park, MN), phycoerythrin-labeled donkey anti-rabbit IgG antibody (406421; Biolegend), and anti-ubiquitin (U5379; Sigma-Aldrich) were used. PARP1 inhibitor 3ABA (300 μM; Sigma-Aldrich) (27 (link)), dimethyl sulfoxide (DMSO), Notch inhibitor N-[N-(3,5-difluorophenacetyl)-l-alanyl]-S-phenylglycine t-butyl ester (DAPT; Sigma-Aldrich), and PLK1 inhibitors BI6727 (volasertib) (28 (link)) and BI2536 (29 (link)) (Selleck Chemicals, Houston, TX) were used.
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5

Cell Cycle Regulation Assay

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Chemicals used in this study include 3-MB-PP1 (Toronto Research Chemicals), BI-2536 (Selleck), MG-132 (Enzo Life Sciences), nocodazole and thymidine (both EMD Biosciences).
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6

HeLa Cell Synchronization and Drug Treatment

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Synchronization of HeLa cells was either done by a single 2 mM thymidine (Sigma-Aldrich, T1895) arrest for 24 h (Figs 1, 2a,b, 3d, 4a,c, 5c–e,g and 6 and Supplementary Figs 1c, 2b, 3C–E, 4C–D, 5A) or a double-thymidine arrest (22 h arrest followed after 9 h by a 17 h arrest (Figs 2d, 3a–c and 5a,f and Supplementary Figs 3a, 4a and 5b). After washout drugs were added: 1 μM Nocodazole (M1404, Sigma-Aldrich), 0.1 μM BI2536 (S1109, Selleck), 10 μM QVD (SML0063, Sigma-Aldrich), 0.5 μM reversine (BML-SC104, Enzo Life Sciences), 2.5 μM (in Fig. 7) or 1 μM (in all other Figures) ABT-737 (S1002, Selleck) were added. Dimethyl sulfoxide (D5879, Sigma-Aldrich) was used as solvent control. G2 time points were harvested after 8 h and the first mitotic time point (‘M') 11 h after release from thymidine arrest. All mitotic time points were harvested by shake-off. Doxycycline (D9891, Sigma-Aldrich) was used in the indicated concentrations. Staurosporine (S-9300, LC Laboratories) was used on asynchronous cells for 4 h at 1 μM.
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7

Mitotic Inhibitors and Modifiers Protocol

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Nocodazole (100 ng/mL, ≥99%), monastrol (50 μM, ≥98%), MG132 (10 μM, ≥90%), OA (500 nM, ≥92%), Reversine (1 μM, ≥98%), Roscovitine (20 μM, ≥98%), NAM (5 mM, ≥99.5%), and TSA (1 μM, ≥98%) were from Sigma. MG149 (100 μM, >99%) was from Axon. NU9056 (20 μM, >98%), ZM447439 (2 μM, >99%) were from Tocris Bioscience. GSK923295 (50 nM, >99%), BI2536 (100 nM, >99%), VX-680 (500 nM, >99%) was from Selleckchem. The protease inhibitors cocktail was from Sigma.
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8

Dissecting PLK1 and E-cadherin Signaling

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Anti-PLK1 (Invitrogen); anti-phosphorylated Myt1 (Thr495) and Myt1 (Thermo Fisher Scientific); anti-poly(ADP-ribose) polymerase, -cleaved poly(ADP-ribose) polymerase, -phosphorylated translational controlled tumor protein (TCTP; Ser46), -cyclin B1, -E-cadherin, -vimentin, -β-catenin, and -Snail (Cell Signaling Technology); anti-TCTP (Abcam); and anti-β-actin (Sigma) antibodies were used. The PLK1 inhibitors BI2536, volasertib, and GSK461364 were purchased from Selleck Chemicals and prepared as 10-mM stock solutions in dimethyl sulfoxide. Predesigned sets of 4 independent small interfering RNA (siRNA) sequences of the target genes PLK1 and CDH1 (siGENOME SMARTpool; Dharmacon) were used. Human transforming growth factor-β1 was purchased from Cell Signaling Technology.
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9

Evaluating PLK1 Inhibitor Cytotoxicity in SCLC

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PLK1 inhibitors Volasertib and BI2536 were obtained from SelleckChem. SCLC cells were seeded in 96-well plates at a density of 2.5 × 103 cells/well and incubated in a medium with threefold serial dilutions of PLK1 inhibitors, starting from 10 µM, for 72 h. After incubation with MTS reagent for 3 h, the absorbance was measured. Absorbance reading from the cells incubated without the inhibitor was used for 100% survival. Data were collected from six technical and three biological replicates for each cell line.
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10

Synchronizing Osteosarcoma and Kidney Cells

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Osteosarcoma U2OS and embryonic kidney HEK 293T cells were cultured in DMEM supplemented with 10% FBS and 2 mM l-glutamine at 37°C in a humidified atmosphere of 5% CO2. U2OS and 293T cells were synchronized to G2 phase by incubation with 10 µM RO-3306 (217699; Calbiochem) and to prometaphase with 100 ng/ml nocodazole (M1404; Sigma-Aldrich) or 10 µM monastrol (M8515; Sigma-Aldrich) for 16 h. To collect mitotic U2OS cells, cells arrested at prometaphase were harvested using the mechanical shake-off procedure. Metaphase arrest was achieved by incubation with 100 ng/ml nocodazole for 16 h, followed by incubation in nocodazole-free medium with 20 µM MG132 for 90 min (474790; Calbiochem). To inhibit PLK1, 100 nM BI2536 (S1109; Selleck Chemicals) was applied to cells treated with nocodazole or MG132 for 90 min.
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