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25 protocols using gs 6r

1

Maternal and Cord Blood Sampling

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Maternal blood samples (5 ml) were extracted from the antecubital vein in standardized fasting conditions (at the 16th and 34th g.w.), and arterial and vein cord blood samples were extracted immediately after delivery. All blood samples were collected in serum tubes and were allowed to clot (coagulation) at room temperature for 30 min. Subsequently, samples were centrifuged at 1750 rpm for 10 min at 4°C in a refrigerated centrifuge (GS−6R Beckman Coulter) to obtain serum, which was aliquoted and frozen at −80°C until analyzed.
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2

Maternal and Fetal Blood Sampling During Labor

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Maternal blood samples were obtained from the antecubital vein at two different times: at the beginning of the active phase of labor and at the start of expulsion when the fetus was at station +2. From the umbilical cord, blood samples were collected from vein and artery, immediately after cord clamping. During the examination, the size, shape, consistency, and completeness of the placenta were determined, and the absence of accessory lobes, placental infarcts, hemorrhage, tumors, and nodules was recorded. Blood was immediately centrifuged at 1750 ×g for 10 min at 4°C in a Beckman GS-6R refrigerated centrifuge (Beckman, Fullerton, CA, USA) to separate plasma from red blood cell pellets. Plasma samples were immediately frozen and stored at −80°C until analysis. Erythrocyte cytosolic and membrane fractions were prepared by differential centrifugation with hypotonic hemolysis and successive differential centrifugations according to the method of Hanahan and Ekholm [16 (link)]. The final fractions were aliquoted, snap-frozen in liquid nitrogen, and stored at −80°C until analysis.
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3

Plasma Separation from Blood Samples

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Blood samples were collected from the participants via venous catheter into heparinized tubes. Two blood samples were taken on each group: when enrolled in the study (T1, basal value), and after 6 months (T2). An aliquot od the blood was used for the measurement of hematological parameters and the rest of the blood was immediately centrifuged at 1,750 x g for 10 min at 4° C in a Beckman GS-6R refrigerated centrifuge (Beckman, Fullerton, CA, USA) to separate plasma from red blood cell pellets.
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4

Western Blotting of Xenograft Proteins

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Western blotting was performed as previously described22 (link), 23 (link), 46 (link). The lysates from the xenografts or cell lines with different treatments were homogenized in RIPA lysis buffer using a homogenizer. The supernatants were collected by centrifugation (12,000 rpm at 4 °C for 25 min; Beckman GS-6R). Protein was resolved by electrophoresis and transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, Bedford, MA, USA). The membranes were probed with monoclonal HIF-1α (NB100–105, Novus biological, Littleton, CO, USA), Bax (2772 S, Cell signaling, Boston, MA, USA), Bcl-2 (3498S, Cell signaling), caspase-3 (9661S, Cell signaling), PARP (5625, Cell signaling), and PCNA (18197, Abcam, Cambridge, MA, USA), as well as p21 (Sc817, Santa Cruz, CA, USA), CDK4 (Sc70831, Santa Cruz), SP1 (ab27595, Abcam), HK2 (2772S, Cell signaling), PKM2 (4053S, Cell signaling), LDH-A (3582S, Cell signaling), and PDK1 (3820 S, Cell signaling). Following incubation with the primary antibody overnight at 4 °C, membranes were washed with Tris-buffered saline (pH 7.2) containing 0.05% Tween-20 and subsequently incubated with horse radish peroxidase (HRP)-conjugated anti-mouse (Sc-2005, Santa Cruz) or anti-rabbit (Sc-2357, Santa Cruz) secondary antibody for 1 h at room temperature. Bands of interest were analyzed using the ChemiDocTM Touch Imaging System (BIO-RAD, Hercules, CA, USA).
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5

Generating β1-Null Cells and Expressing Human β1 Integrins

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β1-floxed cells were transduced with Ad5CMV-Cre-GFP virus (Vector Development Lab) at a MOI 400 and after a week of culture, β1-null cells were purified by negative selection using a Miltenyi Biotec sorting kit and anti-Cy7 microbeads. To generate cells expressing human β1 integrins, β1-null cells were transduced with retrovirus encoding for hβ1 variants as described previously (23 (link)). Cells were plated on tissue culture polystyrene at 2 × 104 cells/cm2 24 h prior to retroviral transduction. Cells were transduced with 0.2 mL/cm2 of retroviral supernatant supplemented with 4 μg/mL hexadimethrine bromide and 10% fetal bovine serum, and centrifuged at 1200g for 30 min in Beckman model GS-6R centrifuge with a swinging bucket rotor. Retroviral supernatant was replaced with growth media (DMEM, 10% FBS, 1%P/S). Five days after transduction, cells were switched to puromycin (2.5 μg/cm2)-supplemented growth media and maintained under selective pressure during culture and expansion.
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6

Isolation of Chorionic and Amniotic Stem Cells

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To isolate CSCs from the chorionic membrane, the membrane was incubated in 1 mg/mL type II collagenase (Worthington Biochemical Cporporation, Lakewood, NJ, USA) at 37 °C, followed by filtering in 100, 70, and 30 μm nylon strainers. The cell digest was centrifuged (Beckman Coulter GS-6R) at 1500 rpm to pellet the CSCs, and a cell count was obtained using a Cellometer (Nexcelom Bioscience, Lawrence, MA, USA). To isolate ASCs from the amniotic membrane, the amniotic membrane was first treated with 0.25% trypsin for 25 min to remove amniotic epithelial cells. After the membrane was washed twice with DPBS, ASC isolation was performed in the same way as the CSC isolation mentioned above. Freshly isolated, uncultured ASCs and CSCs were used for RNA-seq, and cells with passages below five were used for the entire in vitro study.
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7

Serum Biomarker Quantification Protocol

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Blood was collected and centrifuged at 3000 rpm (Beckman GS-6R, Germany) at 4 °C for 30 min to separate the serum. Serum ALT and AST levels were measured using spectrophotometric diagnostic kits (Roche, Germany).
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8

Pigment Extraction from Algae and Cyanobacteria

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Two types of extraction media were used to isolate pigments from algal cells: 90 % acetone solution with respect to chlorophylls and carotenoids (Parsons et al. 1984 ) and extraction medium consisted of 0.25 M Trizma Base, hydrated 10 mM disodium EDTA (2H2O), and 2 mg cm−3 lysozyme; the initial pH 9 was adjusted to final 5.5 (HCl)—in case of extraction phycobiliproteins from cyanobacteria cells (according to Steward and Farmer 1984 ). Chlorophylls and carotenoids were extracted by mechanical grinding and sonication (2 min, 20 kHz, Cole Parmer, 4710 Series) in the darkness conditions at 4 °C for 2 h. Procedure of isolation of phycobiliproteins from cells was based on combination of a gentle mechanical grinding and enzymatic (lysozyme) reaction in order to successfully disintegrate cell walls and improve pigment extraction efficiency in darkened room conditions. Filers were then incubated at 37 °C for 2 h in a dry block heat bath (Thermoleader, Uniequip) and after that kept in dark at 4 °C for 24 h. The extract was then centrifuged (20 min, 5 °C, 3210×g, Beckman, GS-6R) to remove the filters and cellular debris.
The clarified extracts were then subjected to the chromatographic analysis in case of chlorophylls and carotenoids and spectrofluorometric measurements in case of phycobilins.
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9

Blood Biomarker Collection Protocol

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Blood samples were collected from the participants by venous catheter into heparinized tubes before and immediately after the physical test. Five blood samples and urine were taken: Before supplementation (basal value) (T1), after supplementation (two weeks) (T2), after first physical exercise test (T3), after 24 h of rest (T4), after second physical exercise test (T5). One aliquot of blood was collected in tubes with an EDTA anticoagulant for hematological analysis. The remaining blood was immediately centrifuged at 1750 g for 10 min at 4 °C in a Beckman GS-6R refrigerated centrifuge (Beckman, Fullerton, CA, USA) to separate plasma from red blood cell pellets. Plasma samples were immediately frozen and stored at −80 °C until analysis.
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10

Serum Separation and Enzyme Analysis

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The blood was centrifuged at 3000 rpm (Beckman GS-6R, Germany) at 4 °C for 30 min to separate the serum. Moreover, ALT, AST, and ALP were measured using spectrophotometric diagnostic kits.
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