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Dako autostainer link 48 system

Manufactured by Agilent Technologies
Sourced in United States

The Dako Autostainer Link 48 system is a fully automated slide-staining instrument designed for immunohistochemistry and in situ hybridization applications. The system can process up to 48 slides simultaneously, providing consistent and reliable staining results.

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22 protocols using dako autostainer link 48 system

1

Comprehensive PD-L1 Immunohistochemistry Protocol

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The H&E-stained specimens in each case were microscopically reviewed and each case was pathologically diagnosed according to the 2015 WHO classification [5 ]. An appropriate FFPE block containing the tumor in each case was selected by reviewing H&E-stained specimens and each FFPE block was sliced into 3-μm-thick tissue sections. The tissue sections were deparaffinized and subjected to immunostaining with the following four anti-PD-L1 antibodies: clone SP142 (Ventana Medical Systems, Tucson, AZ, USA), clone SP263 (Ventana Medical Systems), clone 22C3 (Dako, Carpinteria, CA, USA), and clone 28-8 (Dako). SP142 and SP263 immunostaining was carried out with a Bond-Max autoimmunostainer (Leica Microsystems, Wetzlar, Germany) and a Bond polymer-refine detection kit (Leica Microsystems). 22C3 and 28-8 immunostaining was carried out with a Dako autostainer Link48 system (Dako) and a PD-L1 PharmDx kit (Dako).
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2

Immunohistochemical Analysis of Irisin, Ki-67, and PGC-1α

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IHC reactions were carried out on TMAs using primary antibodies to detect the expression of the proteins. Paraffin sections with a 4 μm thickness were prepared. After deparaffinization and hydration, thermal epitope demasking was performed using a Dako PT Link (Dako, Glostrup, Denmark) apparatus and low pH Target Retrieval Solution (Agilent Technologies, Santa Clara, CA, USA) for 30 min at 97 °C. To visualize the antigen, we used polyclonal rabbit anti-irisin (dilution 1:50; code no. NBP2-14024; Novus Biologicals, Littleton, CO, USA) with EnVision™ FLEX+ Mouse LINKER (Dako). Monoclonal mouse anti-Ki-67 antibodies (ready to use; clone MIB-1; code no. IS626; Dako) and polyclonal rabbit anti-PGC-1α antibodies (dilution 1:3200; code no. NBP1-04676, Novus Biologicals) were used to detect other markers. An automatic DAKO Autostainer Link 48 system (Dako) was used for the IHC reactions and an EnVision FLEX kit (Dako) was used to visualize the antigens. The slides were additionally stained with Mayer’s hematoxylin.
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3

Immunostaining for NSCLC Biomarkers

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Immunostaining for thyroid transcription factor 1 (TTF‐1) (SP141, Roche/Ventana Medical Systems), p40 (BC28, Abcam) and PD‐L1 (22C3, Dako) was performed in non–small cell lung cancer (NSCLC) samples. The biopsy samples were fixed in neutral 10% buffered formalin and embedded in paraffin. For immunostaining, all formalin‐fixed paraffin‐embedded (FFPE) tissue biopsy samples were cut into 4‐μm‐thick sections. For TTF‐1 and p40 staining, the automated staining system Benchmark ULTRA (Roche) was used. For PD‐L1 staining, the Dako Autostainer Link 48 system (Dako) was used.
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4

PD-L1 Immunohistochemistry on FFPE Tumor Samples

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An appropriate formalin-fixed and paraffin-embedded (FFPE) block containing the tumor in each case was selected by reviewing H&E-stained specimens, and each FFPE block was sliced into 3-μm-thick tissue sections. The tissue sections were deparaffinized and subjected to immunostaining with the following for anti-PD-L1 antibodies: clone SP142 (Ventana Medical Systems, Tucson, AZ, USA), clone SP263 (Ventana Medical Systems), clone 28-8 (Dako, Carpentaria, CA, USA), and clone 22C3 (Dako). SP142 and SP263 immunostaining was carried out with a Bond-Max autoimmunostainer (Leica Microsystems, Wetzlar, Germany) and a Bond polymer-refine detection kit (Leica Microsystems). 28-8 and 22C3 immunostaining was carried out with a Dako autostainer Link48 system (Dako) and a PD-L1 PharmDx kit (Dako).
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5

PD-L1 and p16 Expression Analysis

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The PD-L1 immunostaining procedure utilized a 22C3 pharmDx kit (Agilent Technologies, Carpinteria, CA, USA) with a Dako Autostainer Link 48 system (Agilent Technologies). To assess PD-L1 expression, the CPS was used. The CPS was calculated by the ratio of the number of PD-L1-stained cells (encompassing viable tumor cells, lymphocytes, and macrophages) to the total number of viable tumor cells, as described previously [16 (link)].
A primary antibody against p16INK4a (1:6, clone E6H4, mouse mAb, Ventana Medical Systems, Oro Valley, AZ, USA) was used for immunostaining. The p16 immunostaining results were interpreted as positive when both the tumor nucleus and cytoplasm exhibited moderate or strong immunoreactivity in > 75% of the tumor cells [17 (link)].
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6

Immune Checkpoint Marker Expression Profiling

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TMA slides were deparaffinized in xylene and rehydrated in graded ethanol series. Subsequently, a 3% H2O2 solution was used to quench endogenous peroxidase activity for 15 minutes. Heat-induced epitope retrieval was conducted using citrate acid buffer at pH 6.0 in a microwave oven for 10 minutes. To prevent nonspecific antibody binding, the slides were then incubated with 5% normal goat serum for 1 hour at room temperature. Next, a T-Cell Exhaustion Marker Antibody Panel (ab254018, Abcam) containing mouse monoclonal anti–PD-1 (1:200) and recombinant rabbit monoclonal anti–CTLA-4 (1:500), anti–TIM-3 (1:500), anti–LAG-3 (1:200), and anti-TIGIT (1:500) were applied to TMA sections at 4°C overnight. According to the manufacturer’s instructions, the sections were then stained with a Dako REAL EnVision Detection System (horseradish peroxidase; HRP, Rabbit/Mouse, Agilent) for 30 minutes at room temperature, followed by 3,3-diaminobenzidine coloration and hematoxylin counterstaining. Finally, the sections were dehydrated in a graded ethanol series and xylene. Dako PD‐L1 IHC 22C3 pharmDx assay (Agilent, Carpinteria, CA), as the first FDA‐approved PD‐L1 IHC companion diagnostic, was used for IHC staining of PD-L1 on a Dako Autostainer Link 48 system (Agilent, Carpinteria, CA) with an EnVision FLEX visualization system according to the manufacturer’s instructions.
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7

PD-L1 Immunohistochemistry Antibody Evaluation

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Serial unstained slides (4 microns) were prepared from each block for subsequent immunohistochemistry (IHC) with the following PD-L1 antibody clones: SP142 (Ventana medical systems, Tucson, AZ, USA), SP263 (Ventana medical systems, Tucson, AZ, USA), 22C3 pharmDX (Agilent technologies, Santa Clara, CA, USA) and E1L3N (Cell Signaling Technologies, Danvers, MA, USA). Sections were stained with the SP142 and SP263 antibody clones on the Ventana Benchmark Ultra automated staining platform, E1L3N on Leica Bond-III Autostainer (Leica Biosystems, Buffalo Grove, IL, USA), and with the 22C3 clone utilized the DAKO EnVision FLEX system on a DAKO Autostainer Link 48 system (Agilent technologies, Santa Clara, CA, USA) according to the manufacturer’s instructions.
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8

PD-L1 Expression Quantification Protocol

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Tissue sections were freshly cut to 4 μm sections, mounted on Fisherbrand
Superfrost Plus Microscope Slides (ThermoFisher), then dried at 60°C for 1 h.
IHC staining was carried out on a Dako Autostainer Link 48 system (Agilent
Technologies) using a Dako PD-L1 IHC 22C3 pharmDx kit (Agilent Technologies)
with an EnVision FLEX visualization system, and then counterstained with
hematoxylin according to the manufacturer’s instructions. The expression of
PD-L1 protein was quantitated using a combined positive score (CPS), which was
calculated as the number of PD-L1-stained cells (tumor cells, lymphocytes, and
macrophages) divided by the total number of viable tumor cells, multiplied by
100. A tumor specimen with a CPS ⩾1 was considered positive for PD-L1
expression.
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9

Immunohistochemical Analysis of PD-L1 Expression

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Tissues were freshly cut into 4-μm sections, mounted on Fisherbrand Superfrost Plus Microscope Slides (Thermo Fisher Scientific), and then dried at 60°C for 1 hour. IHC staining was carried out on a Dako Autostainer Link 48 system (Agilent Technologies) using the Dako PD-L1 IHC 22C3 pharmDx Kit (Agilent Technologies) with the EnVision FLEX Visualization System and counterstained with hematoxylin according to the manufacturer's instructions. PD-L1 protein expression was determined using CPS, which was the number of PD-L1–stained cells (tumor cells, lymphocytes, and macrophages) divided by the total number of viable tumor cells and multiplied by 100. The specimen was considered to have PD-L1 expression if CPS ≥ 1.
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10

Immunohistochemical Analysis of FFPE Tissues

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FFPE tissue blocks were sectioned to 4 μm and mounted on Fisherbrand Superfrost Plus Microscope Slides (ThermoFisher), then dried at 60 °C for 1 h. Immunohistochemistry (IHC) staining was carried out on a Dako Autostainer Link 48 system (Agilent Technologies) using PD-L1 IHC 22C3 pharmDx kit (DAKO Agilent Technologies), COX-2 (clone CX-294 DAKO), MUC1 (clone E29 DAKO), and hypoglycosylated MUC1 (5E5, Creative Biolabs) with polymer refine detection (Leica DS9800), and counterstained with hematoxylin according to the manufacturer’s instructions.
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