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Rf 5301pc spectrophotometer

Manufactured by Shimadzu
Sourced in Japan

The RF-5301PC spectrophotometer is a laboratory instrument designed for fluorescence analysis. It measures the intensity of fluorescence emitted by a sample when exposed to light. The instrument provides accurate and reliable measurements of fluorescence intensity, which can be used for various analytical applications in fields such as chemistry, biochemistry, and environmental science.

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32 protocols using rf 5301pc spectrophotometer

1

Characterizing AMDX-TTR Binding Affinity

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The binding of AMDX with TTR was characterized by measuring the fluorescent spectra. AMDX compound solution 4 µM was prepared with and without 5 µM of aggregated TTR in triplicates. The maximum absorbance, emission, and excitation wavelength of AMDX-9101 with and without aggregated TTR was measured on a Shimadzu RF-5301PC spectrophotometer with the LabSolutions RF software (Shimadzu, Kyoto, Japan). The fold increase was calculated by measuring the relative fluorescent unit of AMDX + TTR/AMDX. The binding affinity (Kd) of AMDX-9101 and TTR was obtained by measuring the emission of increasing AMDX-9101 (0–10 µM) with a constant TTR concentration (5 µM) using the previously measured maximum excitation of 440 nm. The Kd was determined by plotting the relative fluorescent unit at maximum emission (λmax em) with TTR versus probe concentration.
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2

Nanoparticle Characterization by TEM, SEM, and Spectroscopy

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The morphology was observed on a transmission electron microscope (TEM) (JEOL, Ltd., Japan) and a scanning electron microscope (SEM) (FESEM, S4800, Hitachi Co. Ltd., Tokyo, Japan). The fluorescence spectroscopy was recorded applying the Shimadzu RF-5301 PC spectrophotometer. The size distribution and Zeta potential was determined with a Nano-ZS 90 Nanosizer (Malvern Instruments Ltd., Worcestershire, United Kingdom).
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3

Bacterial Membrane Permeability Assay

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Large unilamellar vesicles (LUVs) composed of egg yolk phosphatidylethanolamine (EYPE)/egg yolk phosphatidylglycerol (EYPG) (7:3, w/w) entrapped with calcein dye was used to determine the bacterial membrane permeability of peptides [23 (link)]. The membrane permeability by peptides was observed by quantifying the fluorescence (excitation/emission λ = 490/520 nm) of calcein leakage from the EYPE/EYPG LUVs using an RF-5301PC spectrophotometer (Shimadzu, Japan).
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4

Characterization of Nanomaterials by Advanced Spectroscopy

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Transmission electron microscopy (TEM) was conducted using a Hitachi H-800 electron microscope at an acceleration voltage of 200 kV. High-resolution TEM (HRTEM) imaging was implemented by a JEM-2100F electron microscope at 200 kV. Fluorescence spectroscopy was performed using a Shimadzu RF-5301 PC spectrophotometer. UV-vis absorption spectra were obtained using a Shimadzu 3100 UV-vis spectrophotometer. Fourier transform infrared (FTIR) spectra were performed with a Nicolet AVATAR 360 FTIR instrument.
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5

Nanoparticle Characterization by Advanced Techniques

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The morphologies of the NPs were characterized using a JEM-2100F transmission electron microscope (JEOL, Ltd., Japan) and a scanning electron microscope (SEM, FEI quanta 200F). Fluorescence spectroscopy was performed using a Shimadzu RF-5301 PC spectrophotometer. NMR spectra were obtained on an AVANCEIII500 (500 MHz) from Bruker. Fourier transform infrared (FTIR) spectra were collected with a Nicolet AVATAR 360 FTIR instrument. The size distribution and zeta potential of the NPs in cell culture media (DMEM containing 10% FBS) were characterized using a Nano-ZS 90 Nanosizer (Malvern Instruments Ltd., Worcestershire, UK).
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6

Calcein-Entrapped LUV Preparation and Leakage Assay

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Calcein-entrapped large unilamellar vesicles (LUVs) composed of EYPC/EYPG (7∶3, w/w)and EYPC/CH (10∶1, w/w) were prepared by vortexing dried lipids in dye buffer solution (70 mM calcein, 10 mM Tris, 150 mM NaCl, 0.1 mM EDTA, pH 7.4). The suspension was subjected to ten freeze-thaw cycles in liquid nitrogen and extruded through polycarbonate filters (two stacked 100-nm pore-size filters) using a LiposoFast extruder (Avestin, Inc.; Ottawa, Canada). Untrapped calcein was removed by gel filtration on a Sephadex G-50 column. Passing through a Sephadex G-50 column usually resulted in an approximately 10-fold dilution of lipid vesicles. The eluted calcein-entrapped vesicles were diluted further to achieve the desired final lipid concentration of 64 µM for the experiments. Leakage of calcein from LUVs was monitored by measuring fluorescence intensity at an excitation wavelength of 490 nm and an emission wavelength of 520 nm on a model RF-5301PC spectrophotometer (Shimadzu; Kyoto, Japan). Vesicles dissolved in 10% Triton X-100 in Tris-buffer (20 µL) were used to establish 100% dye-release and the total volume of the assay was 2 mL. The percentage of dye-leakage caused by the peptides was calculated as follows:
where F is the fluorescence intensity of peptide-treated vesicles, and F0 and Ft are the fluorescence intensities without peptides and with Triton X-100, respectively.
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7

Comprehensive Characterization of Novel Materials

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Gel permeation chromatography (GPC) analysis was carried out with a Waters 410 instrument using tetrahydrofuran as the eluent flow rate of 1 mL min−1, at 35 °C and polystyrene as the standard. 1H NMR and 13C NMR spectra were measured using a Bruker AVANCE-500 NMR spectrometer and a Varian Mercury-300 NMR, respectively. UV-vis absorption spectra were measured by a Lambda 800 UV-vis spectrophotometer. A a JEM-2100F electron microscope was used to conduct TEM. The Bruker Dimension Icon was used to perform the AFM measurements. An integrated ultrahigh-vacuum system equipped with a multitechnique surface analysis system (VG Scienta R3000) for ultraviolet photoelectron spectroscopy (UPS) was used to obtain the energy band values. The electrochemical cyclic voltammetry (CV) was conducted on a Bioanalytical Systems BAS 100 B/W electrochemical workstation. The photoluminescence (PL) spectra were implemented with a Shimadzu RF-5301 PC spectrophotometer. Under the AM 1.5 G 100 mW cm−2 illumination, a computer-controlled Keithley 2400 sourcemeter system was used to measure the current density versus voltage (JV) characteristics. A Crowntech QTest Station 1000AD was used to measure the external quantum efficiency (EQE).
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8

FUS RRM Domain Fluorescence Quenching

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To assess the ATP-induced quench of the intrinsic Trp UV fluorescence of the FUS RRM domain, the spectra were measured with the excitation wavelength at 280 nm at 25 °C with a RF-5301 PC spectrophotometer (Shimadzu, Japan) on the sample of FUS RRM at 40 µM in 10 mM sodium phosphate buffer containing 150 mM NaCl (pH 6.8) in the presence of ATP at different concentrations.
ThT-binding assay followed the same protocol we previously used to monitor amyloid formation of FUS RRM14 (link). Briefly, a 2-mM ThT stock solution was prepared by dissolving ThT in milli-Q water and filtered through a 0.22-μm Millipore filter. The fresh working solution was prepared by diluting the stock solution into 10 mM sodium phosphate buffer containing 150 mM NaCl (pH 6.8) to reach a final ThT concentration of 50 μM. A 10-μL aliquot of each incubation solution or 10 μL aliquot of the incubation buffer as the control, was mixed with 130 μL of the ThT working solution in the dark for 10 min. The fluorescence emission spectra were acquired for three repeats with the excitation wavelength at 442 nm and slit widths: excitation at 5 nm and emission at 10 nm14 (link).
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9

Synthesis and Characterization of AIE Dots

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All the chemicals were purchased from Aladdin (Beijing, China), J&K (Beijing, China) or Sigma-Aldrich (St. Louis, MO, USA), unless specifically stated. All the reagents were commercially available and of analytical reagent grade. The other solvents were purified by fractional distillation. Prior to use, all solvents were purified by fractional distillation. Deionized water with a resistivity of 18.2 MΩ·cm was used from a Milli-Q water purification system (Millipore Corp., Billerica, MA, USA). NMR spectra were recorded by Bruker Avance 300 (Bruker Corp., Rheinstetten, Germany). Mass spectra were recorded on an Agilent 1100 LC-MS system (Agilent Technologies Inc., Foster, CA, USA). The preparation process of AIE dots was completed by a bath sonicator (Bransonic, CPX2800H-C, Emerson Electric Co., Ferguson, MO, USA). UV-Vis absorption spectra were recorded using a UV-2550 UV-Vis spectrophotometer (Shimadzu Corp., Kyoto, Japan). Fluorescence spectra were measured by a Shimadzu RF-5301PC spectrophotometer (Shimadzu Corp., Kyoto, Japan). Transmission electron microscopy (TEM) images of the AIE dots were taken by JEM-2100F at 200 kV (JEOL, Ltd., Kyoto, Japan). DLS measurement was performed using a Malvern ZetasizerNano ZS size analyzer (Malvern Panalytical Ltd., Malvern, UK) at room temperature.
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10

Curcumin-Paclitaxel Nanoparticle Production

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The PC NDs were prepared using a reprecipitation method. First, Cur and PTX were dissolved in ethyl alcohol to provide solutions with concentrations of 2 mg/ml. Next, 0.4 ml of the PTX solution and 0.1 ml of the Cur solution were quickly added to 4.5 ml of deionized water, vortexed for 1 min and allowed to stand for 15 min to produce PC NDs. Finally, PC NDs were purified via ultrafiltration and collected via lyophilization, which provided a 4:1 weight ratio (PTX to Cur) after quantified by UV-vis method.
The morphology of PC NDs was inspected by a transmission electron microscope (JEOL, Ltd., Japan) and a scanning electron microscope (FESEM, S4800, Hitachi Co. Ltd., Tokyo, Japan). Fluorescence spectroscopy was performed using a Shimadzu RF-5301 PC spectrophotometer. UV–vis absorption spectra were obtained using a Shimadzu 3100 UV–vis spectrophotometer. Fourier transform infrared (FTIR) spectra were performed with a Nicolet AVATAR 360 FTIR instrument. X-ray powder diffraction (XRD) investigation was carried out on a Rigaku X-ray diffractometer using Cu Kα radiation. A Nano-ZS 90 Nanosizer (Malvern Instruments Ltd., Worcestershire, United Kingdom) was used to determine the size distribution and zeta potential of PC NDs.
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