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12 protocols using ab110638

1

Western Blot Analysis of Cell Cycle and DNA Repair Proteins

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Total proteins were extracted from transfected or non-transfected cells, loaded (50 μg per lane) on 10% sodium dodecyl sulfate (SDS)-polyacrylamide gels, and transferred onto PVDF membranes (Thermo Fisher Scientific). The membranes were blocked for 2 h at 37°C with 5% nonfat milk in Tris-buffered saline with Tween 20 (TBST) and then incubated overnight at 4°C with the following primary antibodies: CDK1 (ab133327, Abcam, Cambridge, UK), cyclin B1 (ab18250; Abcam), cyclin A2 (18202-1-AP; Proteintech, Wuhan, China), MLH1 (ab92312; Abcam), PMS2 (ab110638; Abcam), MSH2 (ab92473; Abcam), MSH6 (ab92471; Abcam) and GAPDH (T0004; Affinity, Changzhou, China). Then, the membranes were incubated with an HRP-conjugated secondary antibody for 1 h at 37°C and covered with ECL luminescence reagent (Perkin-Elmer Inc., Waltham, MA, USA). GAPDH was used as the internal control.
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2

Immunohistochemical Analysis of DNA Repair Proteins

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Immunostains for Chk2 protein expression were performed on 4 μm sections from colon tumor and normal mucosa from family K and CRC control or healthy control. After deparaffinization, citrate buffer was used to retrieve antigen. Endogenous peroxidase was inactivated with 3% H2O2 dilution for 15 minutes. Tissues were blocked with 10% goat serum for 1 hour at room temperature. The Chk2 primary antibody (ab109413, diluted at 1:100, Abcam) was incubated overnight at 4°C. The goat anti-rabbit/mouse secondary antibody (Thermo Fisher Scientific, D-3004) was incubated for 1 hour at room temperature and subsequently revealed with DAB substrate (Dako) for 3 minutes. Slides were finally stained in hematoxylin. Immunostains for MSH2 (Thermo Fisher Scientific, diluted at 1:150, 33-7900), MSH6 (Abcam, diluted at 1:150, ab92471), PMS2 (Abcam, diluted at 1:100, ab110638), and MLH1 (Abcam, diluted at 1:100, ab92312) proteins expressions were performed as described above.
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3

Antibody Profiling for Cancer Markers

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The following antibodies were purchased from the respective suppliers: anti-RNPS1 (ab79233), anti-Ki-67 (ab15580), anti-CEA (ab207718), anti-CA199 (ab3982), anti-CA153 (ab109185), anti-HE4 (ab200828), anti-Bcl-2 (ab182858), anti-Bax (ab182733), anti-MLH1 (ab92312), anti-cleaved caspase-3 (ab2302), anti-MSH2 (ab212188), anti-MSH6 (ab92471), and anti-PMS2 (ab110638) (all from Abcam, Cambridge, USA) and anti-β-actin (M01263-2; Boster, Wuhan, China). The secondary antibodies used were anti-rabbit IgG (AS014) and anti-mouse IgG (H+L) (AS003), both from ABclonal (Wuhan, China), and IMR-1A (HY-100431A; MedChemExpress, Dallas, TX, USA).
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4

Immunohistochemical Analysis of DNA Repair Proteins

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Paraffin-embedded tissue sections were deparaffinized and antigen retrieval was carried out using citrate buffer (pH = 6.0). Hydrogen peroxide was used for quenching the endogenous peroxide. IHC for O6-methylguanine-DNA methyltransferase (MGMT), MutS homolog 6 (MSH6), MutS homolog 2 (MSH2), MutL homolog 1 (MLH1), and postmeiotic segregation increased 2 (PMS2) was carried out on 21 tissue specimens of 29 operated patients. The tissue sections were incubated with primary antibodies for MGMT (MT 3.1, 1:100, Dako), MSH6 (44, 1:100, Bio SB, USA), MSH2 (G-219-1192, 1:100, Bio SB, USA), MLH1 (ab 92312, 1:100, Abcam, UK), and PMS2 (ab 110638, 1:100, Abcam, UK). After washing, slides were incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies and signal was developed using DAB (Lab Vision™ UltraVision™ ONE Detection System). For all IHC parameters, each specimen was assessed for percentage of positively staining cells and the intensity assessment was performed as follows: 0 = negative, 1 = low positive, 2 = medium positive, and 3 = strong positive. The intensity of staining and the number of stained cells were considered for each case and the product was calculated to obtain the h-score. Positive controls used for immunohistochemistry were tissue specimens of colon cancer, and negative controls were evaluated by omission of primary antibody in the tissue specimens.
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5

Assessing Mismatch Repair Deficiency

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MMR status was assessed by IHC staining with the antibodies for MLH1 (dilution 1:250; ab92312, Abcam), PMS2 (dilution 1:200; ab110638, Abcam), MSH2 (dilution 1:200; abs135777, Absin), and MSH6 (dilution 1:500; #12988, CST) as previously described (42 (link)). Normal colonic epithelium was used as external control. Quality check was done using confirmative positive and negative samples. The interpretation of IHC was carried out independently by two pathologists. Lymphocytes, stromal cells, and blood vessels showed positive nuclear staining (internal control). In the presence of retained internal control, negative staining in tumor cells indicated MMR deficiency.
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6

MMR Proteins Immunohistochemistry

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Antibodies against MMR proteins performed in this study were the following: rabbit monoclonal anti-MLH1 antibody (dilution 1:100, #ab92312) (Abcam, Cambridge, MA, USA), mouse monoclonal anti-MSH2 antibody (dilution 1:50, #33-7900) (Invitrogen, Carlsbad, CA, USA), rabbit monoclonal anti-MHS6 antibody (dilution 1:100, #ab92471) (Abcam, Cambridge, MA, USA) and anti-PMS2 antibody (dilution 1:25, #ab110638) (Abcam, Cambridge, MA, USA).
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7

Endometrial Cell Line Characterization

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This study used normal endometrial cells (NECs), KLE cells, RL952 cells, Ishikawa cells, and ECC-1 cells. They were maintained and cultured as previously described [15 (link)]. The cell lines used in this study were as follows: normal endometrial cells (NEC, CP-H058, Procell, Wuhan, China), KLE (CL-0133, Procell, Wuhan, China), RL952 (CL-0197, Procell, Wuhan, China), Ishikawa (CL-0283, Procell, Wuhan, China), and ECC-1 (BS-C163325, BinSuiBio, Shanghai, China).
The following antibodies were used: Anti-METTL5 (16791-1-AP, Proteintech, Rosemont, USA), anti-Ki-67 (ab15580, Abcam, Cambridge, USA), anti-CEA (ab207718, Abcam, Cambridge, USA), anti-CA199 (ab3982, Abcam, Cambridge, USA), anti-CA153 (ab109185, Abcam, Cambridge, USA), anti-HE4 (13, ab200828, Abcam, Cambridge, USA), anti-MLH1 (ab92312, Abcam, Cambridge, USA), anti-MSH2 (ab212188, Abcam, Cambridge, USA), anti-MSH6 (ab92471, Abcam, Cambridge, USA), anti-PMS2 (ab110638, Abcam, Cambridge, USA), and anti-β-actin (M01263-2, Boster, Wuhan, China).
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8

Mismatch Repair Protein IHC in UTUC

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A total of 175 individual cases with formalin-fixed paraffin-embedded (FFPE) tumor blocks were collected. All hematoxylin and eosin-stained slides were reviewed by two professional pathologists. Tissue microarrays (TMAs) of 175 UTUC cases were constructed from the most typical regions of each case. MMR protein IHC was applied to detect the expression of the DNA MMR proteins MLH1 (#ab92312, Abcam, UK), PMS2 (#ab110638, Abcam, UK), MSH2 (#ab227941, Abcam, UK), and MSH6 (#ab92471, Abcam, UK). MMR proteins were considered lost when the tumor nuclei completely lacked staining and a positive internal control was present in the form of lymphocytes and/or endothelial cells.
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9

Immunohistochemical Analysis of MMR Proteins

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Anti–MLH1 (1:250 dilution; ab92312; AbCam plc), anti–MSH2 (1:8000 dilution; ab227941; AbCam plc), anti–MSH6 (1:500 dilution; ab92471; AbCam plc), and anti–PMS2 (1:100 dilution; ab110638; AbCam plc) antibodies were used as primary antibodies. IHC staining was performed according to the manufacturer’s instructions. Briefly, 3‐μm‐thick deparaffinized sections of FFPE were stained using primary antibodies specific for the above MMR genes. Antigens were retrieved by boiling tissue sections in Target Retrieval Solution (Dako). Envision+Dual Link HRP (Dako) was used as a secondary antibody and diaminobenzidine was used as the chromogen. IHC staining was blindly examined by two independent investigators.
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10

Comprehensive Antibody Profiling for Biomarker Analysis

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BRD4 (ab128874), MLH1 (ab92312), MSH2 (ab70270), and PMS2 (ab110638) antibodies were from Abcam. GAPDH (A19056), β-tubulin (A12289), and PMS2 (A19928) antibodies were from ABclonal. MSH6 (GTX11661) antibody was from GeneTex. BRD4 (83375) antibody was from Cell Signaling Technology.
AZD5153 (S8344) and JQ1 (S6993) were from Selleck. Compounds were dissolved in Dimethyl sulfoxide (DMSO) and stored as 10 mmol/L aliquots at instruction temperature. Anti-PD-L1 antibody (BE0101, clone B7-H1) and IgG isotype control (BE0090) were from Bio X Cell.
Fixable Viability Stain (BV510), CD45 (APC-Cy7 30-F11), CD3 (PE), CD4 (BV605 RM4–5), CD8a (FITC), CD25 (PE-Cy7 PC61), Foxp3 (Alexa Fluor 647), IFN-γ (PerCP-Cy5.5 XMG1.2), PD-1 (BV650 J43), PD-L1 (BV786), Transcription Factor Buffer Set and The Leukocyte Activation Cocktail (Leuko Act Cktl with GolgiPlug) were from BD Biosciences. Mouse CD16/32, and TIM-3 (BV421) were from BioLegend.
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